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Fix hierarchy under anatomical cluster (part 1) #2862

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merged 6 commits into from
Apr 5, 2023
Merged

Fix hierarchy under anatomical cluster (part 1) #2862

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08aded5
Update definition of 'anatomical cluster'.
gouttegd Apr 3, 2023
36dd9d3
Remove irrelevant cross-references on 'anatomical cluster'.
gouttegd Apr 3, 2023
029cfa2
Move terms wrongly classified as 'anatomical cluster'.
gouttegd Apr 3, 2023
f62b36e
Remove bogus cross-reference on 'anatomical cluster'.
gouttegd Apr 5, 2023
bb4494c
Re-classify 'accessory articulation' as 'articulation'.
gouttegd Apr 5, 2023
ed3690b
Avoid using 'cluster' on non-cluster terms.
gouttegd Apr 5, 2023
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Avoid using 'cluster' on non-cluster terms. 
To avoid needless confusion, terms that are not classified as
'anatomical cluster' should not use the word 'cluster' in their
definition.
@gouttegd
gouttegd committed Apr 5, 2023
commit ed3690bde91245009b41aa7539e432ff334ddfbd
4 changes: 2 additions & 2 deletions src/ontology/uberon-edit.obo
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Original file line number Diff line number Diff line change
@@ -9662,7 +9662,7 @@ property_value: homology_notes "Most anatomists now agree that the three proxima
[Term]
id: UBERON:0000982
name: skeletal joint
def: "Anatomical cluster that consists of two or more adjacent skeletal structures, which may be interconnected by various types of tissue[VSAO]." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, VSAO:0000101, Wikipedia:Joint]
def: "Anatomical structure that consists of two or more adjacent skeletal structures, which may be interconnected by various types of tissue[VSAO]." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, VSAO:0000101, Wikipedia:Joint]
subset: efo_slim
subset: organ_slim
subset: pheno_slim
@@ -93962,7 +93962,7 @@ relationship: part_of UBERON:0002104 ! visual system
[Term]
id: UBERON:0004905
name: articulation
def: "Anatomical cluster that connects two or more adjacent skeletal elements or hardened body parts." [http://orcid.org/0000-0002-6601-2165]
def: "Anatomical structure that connects two or more adjacent skeletal elements or hardened body parts." [http://orcid.org/0000-0002-6601-2165]
subset: grouping_class
synonym: "joint" NARROW []
is_a: UBERON:0034921 ! multi organ part structure