Update uberon-edit.obo

def and ref update

src/ontology/uberon-edit.obo

@@ -36856,7 +36856,7 @@ intersection_of: UBERON:0000483 ! epithelium
 intersection_of: part_of UBERON:0002187 ! terminal bronchiole
 relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 ! Aleix Puig-Barbé
 relationship: has_part CL:0000158 {source="FMA"} ! club cell
-relationship: has_part CL:1000271 ! lung ciliated cell
+relationship: has_part CL:1000271 ! lung multiciliated epithelial cell
 property_value: taxon_notes "A pseudostratified epithelium, containing basal cells, stem cells of the airway, submucosal glands and cartilage rings, is limited to the trachea and large lobar airways in the mouse (Morrisey and Hogan, 2010). This more complex epithelium extends to terminal bronchioles in the human[DOI:10.1242/dev.115469]" xsd:string
 
 [Term]
@@ -39644,8 +39644,8 @@ intersection_of: part_of UBERON:0002186 ! bronchiole
 relationship: contributes_to_morphology_of UBERON:0002186 ! bronchiole
 relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 ! Aleix Puig-Barbé
 relationship: has_part CL:0000158 ! club cell
-relationship: has_part CL:0002145 {source="FMA"} ! ciliated columnar cell of tracheobronchial tree
-relationship: has_part CL:1000271 ! lung ciliated cell
+relationship: has_part CL:0002145 {source="FMA"} ! multiciliated columnar cell of tracheobronchial tree
+relationship: has_part CL:1000271 ! lung multiciliated epithelial cell
 relationship: part_of UBERON:0005039 ! mucosa of bronchiole
 
 [Term]
@@ -47868,7 +47868,7 @@ intersection_of: UBERON:0000483 ! epithelium
 intersection_of: part_of UBERON:0002183 ! lobar bronchus
 relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 ! Aleix Puig-Barbé
 relationship: has_part CL:0002329 ! basal epithelial cell of tracheobronchial tree
-relationship: has_part CL:0002332 ! ciliated cell of the bronchus
+relationship: has_part CL:0002332 ! multiciliated epithelial cell of the bronchus
 relationship: has_part CL:0017000 ! pulmonary ionocyte
 
 [Term]
@@ -47925,10 +47925,10 @@ relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 ! Aleix Puig-
 relationship: has_part CL:0000158 ! club cell
 relationship: has_part CL:0002208 ! brush cell of bronchus
 relationship: has_part CL:0002329 ! basal epithelial cell of tracheobronchial tree
-relationship: has_part CL:0002332 ! ciliated cell of the bronchus
+relationship: has_part CL:0002332 ! multiciliated epithelial cell of the bronchus
 relationship: has_part CL:0017000 ! pulmonary ionocyte
 relationship: has_part CL:1000143 ! lung goblet cell
-relationship: has_part CL:1000223 ! lung neuroendocrine cell
+relationship: has_part CL:1000223 ! pulmonary neuroendocrine cell
 relationship: part_of UBERON:0002184 ! segmental bronchus
 
 [Term]
@@ -72969,8 +72969,8 @@ id: UBERON:0003532
 name: hindlimb skin
 def: "A zone of skin that is part of a hindlimb [Automatically generated definition]." [OBOL:automatic]
 synonym: "hind limb skin" EXACT [OBOL:automatic]
-synonym: "lower limb skin" EXACT [FMA:23102]
 synonym: "lower limb skin" EXACT [https://orcid.org/0000-0002-0819-0473]
+synonym: "lower limb skin" EXACT [FMA:23102]
 synonym: "skin of hind limb" EXACT [OBOL:automatic]
 synonym: "skin of hindlimb" EXACT [OBOL:automatic]
 synonym: "skin of lower extremity" EXACT [OBOL:automatic]
@@ -116143,7 +116143,7 @@ xref: NCIT:C45715
 xref: UMLS:C0682578 {source="ncithesaurus:Glandular_Epithelium"}
 xref: UMLS:C1708242 {source="ncithesaurus:Glandular_Epithelial_Tissue"}
 intersection_of: UBERON:0000483 ! epithelium
-intersection_of: composed_primarily_of CL:0000150 ! glandular epithelial cell
+intersection_of: composed_primarily_of CL:0000150 ! glandular secretory epithelial cell
 disjoint_from: UBERON:0011952 ! non-glandular epithelium
 property_value: editor_note "consider splitting epithelium from epithelial tissue" xsd:string
 
@@ -117486,14 +117486,14 @@ xref: FMA:64800
 xref: NCIT:C13182
 xref: UMLS:C0225337 {source="ncithesaurus:Columnar_Epithelium"}
 intersection_of: UBERON:0000485 ! simple columnar epithelium
-intersection_of: composed_primarily_of CL:0000150 ! glandular epithelial cell
+intersection_of: composed_primarily_of CL:0000150 ! glandular secretory epithelial cell
 
 [Term]
 id: UBERON:0006930
 name: glandular cuboidal epithelium
 xref: FMA:66809
 intersection_of: UBERON:0000484 ! simple cuboidal epithelium
-intersection_of: composed_primarily_of CL:0000150 ! glandular epithelial cell
+intersection_of: composed_primarily_of CL:0000150 ! glandular secretory epithelial cell
 
 [Term]
 id: UBERON:0006931
@@ -134921,7 +134921,7 @@ synonym: "pulmonary neuroepithelial body" EXACT [MP:0010921]
 xref: EMAPA:37943 {source="MA:th"}
 is_a: UBERON:0000061 {source="MP"} ! anatomical structure
 relationship: contributes_to_morphology_of UBERON:0000115 ! lung epithelium
-relationship: has_part CL:1000223 ! lung neuroendocrine cell
+relationship: has_part CL:1000223 ! pulmonary neuroendocrine cell
 relationship: part_of UBERON:0000115 ! lung epithelium
 relationship: part_of UBERON:8600018 ! neuroendocrine system
 
@@ -224710,7 +224710,7 @@ property_value: dcterms-date "2024-11-14T15:00:21Z" xsd:dateTime
 [Term]
 id: UBERON:8700003
 name: stratum corneum of esophageal epithelium
-def: "The outermost layer of the stratified squamous epithelium lining the esophagus, composed of several layers of flattened, anucleated keratinocytes called corneocytes. It forms the primary protective barrier against mechanical, chemical, and microbial insults, while regulating permeability and contributing to tissue integrity. This layer is characterized by corneocytes embedded in a lipid-rich extracellular matrix, providing mechanical reinforcement and maintaining essential barrier functions of the esophageal lining." [doi:10.1038/gimo15, PMID:21126700, PMID:26019440]
+def: "The outermost layer of the stratified squamous epithelium lining the esophagus, composed of several layers of flattened epithelial cells that are partially or non-keratinized. This layer provides a protective barrier against mechanical and chemical insults, contributing to tissue integrity and regulating permeability through its apical cell membranes and intercellular junctional complexes." [doi:10.1038/gimo15, doi:10.1152/ajpgi.00088.2015, https://en.wikipedia.org/wiki/Stratified_squamous_epithelium, PMID:21126700, PMID:26019440]
 is_a: UBERON:0010304 ! non-keratinized stratified squamous epithelium
 relationship: dc-contributor https://orcid.org/0009-0005-7919-4905
 relationship: part_of UBERON:0001043 ! esophagus