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Fixes #2850 GO-link to unipolar brush cell (#2951)
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Fixes #2850

Imported dendriole and linked it to unipolar brush cell
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@Caroline-99
Caroline-99 authored Feb 18, 2025
1 parent 4850825 commit bb64511
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Showing 3 changed files with 33 additions and 1 deletion.
2 changes: 2 additions & 0 deletions src/ontology/cl-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -3181,6 +3181,7 @@ Declaration(Class(obo:GO_0036053))
Declaration(Class(obo:GO_0036376))
Declaration(Class(obo:GO_0042599))
Declaration(Class(obo:GO_0044237))
Declaration(Class(obo:GO_0044293))
Declaration(Class(obo:GO_0044316))
Declaration(Class(obo:GO_0045428))
Declaration(Class(obo:GO_0046697))
Expand Down Expand Up @@ -30689,6 +30690,7 @@ AnnotationAssertion(terms:contributor obo:CL_4023161 <http://orcid.org/0000-0001
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023161 "neuronal brush cell")
AnnotationAssertion(rdfs:label obo:CL_4023161 "unipolar brush cell")
SubClassOf(obo:CL_4023161 obo:CL_0000099)
SubClassOf(obo:CL_4023161 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0044293))
SubClassOf(obo:CL_4023161 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070025))
SubClassOf(obo:CL_4023161 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002028))
SubClassOf(obo:CL_4023161 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061535))
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3 changes: 2 additions & 1 deletion src/ontology/imports/go_terms.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -19,4 +19,5 @@ GO:0001552
GO:0019626
GO:0098535
GO:0046697
GO:0002491
GO:0002491
GO:0044293
29 changes: 29 additions & 0 deletions src/ontology/imports/merged_import.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -3876,6 +3876,8 @@ Declaration(Class(<http://purl.obolibrary.org/obo/GO_0044258>))
Declaration(Class(<http://purl.obolibrary.org/obo/GO_0044281>))
Declaration(Class(<http://purl.obolibrary.org/obo/GO_0044282>))
Declaration(Class(<http://purl.obolibrary.org/obo/GO_0044283>))
Declaration(Class(<http://purl.obolibrary.org/obo/GO_0044292>))
Declaration(Class(<http://purl.obolibrary.org/obo/GO_0044293>))
Declaration(Class(<http://purl.obolibrary.org/obo/GO_0044297>))
Declaration(Class(<http://purl.obolibrary.org/obo/GO_0044306>))
Declaration(Class(<http://purl.obolibrary.org/obo/GO_0044316>))
Expand Down Expand Up @@ -56296,6 +56298,33 @@ AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/GO_0044283> "smal
SubClassOf(<http://purl.obolibrary.org/obo/GO_0044283> <http://purl.obolibrary.org/obo/GO_0009058>)
SubClassOf(<http://purl.obolibrary.org/obo/GO_0044283> <http://purl.obolibrary.org/obo/GO_0044281>)

# Class: <http://purl.obolibrary.org/obo/GO_0044292> (dendrite terminus)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "GOC:jl") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "NIF_Subcellular:sao28175134") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/GO_0044292> "A structure at the distal end of a dendrite adapted to carry out a specific function, e.g. dendriole.")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#creation_date> <http://purl.obolibrary.org/obo/GO_0044292> "2010-02-04T03:14:37Z")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/GO_0044292> "NIF_Subcellular:sao28175134")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/GO_0044292> "dendrite terminal")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/GO_0044292> "terminal specialization of a dendrite")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/GO_0044292> "cellular_component")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym> <http://purl.obolibrary.org/obo/GO_0044292> "dendrite terminal specialization")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "NIF_Subcellular:sao28175134") <http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym> <http://purl.obolibrary.org/obo/GO_0044292> "terminal specialization")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/GO_0044292> "GO:0044292")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/GO_0044292> "dendrite terminus")
SubClassOf(<http://purl.obolibrary.org/obo/GO_0044292> <http://purl.obolibrary.org/obo/GO_0110165>)
SubClassOf(<http://purl.obolibrary.org/obo/GO_0044292> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0030425>))
SubClassOf(<http://purl.obolibrary.org/obo/GO_0044292> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0042995>))

# Class: <http://purl.obolibrary.org/obo/GO_0044293> (dendriole)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "GOC:jl") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "NIF_Subcellular:sao28175134") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "NIF_Subcellular:sao295057932") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:8300904") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/GO_0044293> "Small dendrites that makes up a brush structure found as the terminal specialization of a dendrite of a unipolar brush cell (UBC).")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#creation_date> <http://purl.obolibrary.org/obo/GO_0044293> "2010-02-04T03:32:02Z")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/GO_0044293> "NIF_Subcellular:sao28175134")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/GO_0044293> "NIF_Subcellular:sao295057932")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/GO_0044293> "cellular_component")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/GO_0044293> "GO:0044293")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/GO_0044293> "dendriole")
SubClassOf(<http://purl.obolibrary.org/obo/GO_0044293> <http://purl.obolibrary.org/obo/GO_0044292>)

# Class: <http://purl.obolibrary.org/obo/GO_0044297> (cell body)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "GOC:go_curators") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/GO_0044297> "The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections.")
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