Adds disease-related objectives

Adds "disease causation objective," "disease prevalence reduction objective," "disease severity reduction objective," and "disease prevention objective" to the objective column of relevant terms.
obi-ontology · Nov 9, 2023 · e809a75 · e809a75
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commit e809a75
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diff --git a/src/ontology/modules/administration.owl b/src/ontology/modules/administration.owl
@@ -105,6 +105,12 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/OBI_0000417 -->
+
+    <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0000417"/>
+
+
+
     <!-- http://purl.obolibrary.org/obo/RO_0000052 -->
 
     <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000052"/>
@@ -590,6 +596,12 @@
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003413">
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0600007"/>
+        <rdfs:subClassOf>
+            <owl:Restriction>
+                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000417"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0003607"/>
+            </owl:Restriction>
+        </rdfs:subClassOf>
         <obo:IAO_0000115>An administration of substance in vivo with the intention to induce disease in the organism.</obo:IAO_0000115>
         <obo:IAO_0000117>IEDB</obo:IAO_0000117>
         <obo:IAO_0000119>IEDB</obo:IAO_0000119>
@@ -602,6 +614,20 @@
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003414">
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0600007"/>
+        <rdfs:subClassOf>
+            <owl:Restriction>
+                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000417"/>
+                <owl:someValuesFrom>
+                    <owl:Class>
+                        <owl:unionOf rdf:parseType="Collection">
+                            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0003608"/>
+                            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0003609"/>
+                            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0003614"/>
+                        </owl:unionOf>
+                    </owl:Class>
+                </owl:someValuesFrom>
+            </owl:Restriction>
+        </rdfs:subClassOf>
         <obo:IAO_0000115>An administration of substance in vivo with the intention to reduce the symptoms of or prevent development of a disease in the organism.</obo:IAO_0000115>
         <obo:IAO_0000117>IEDB</obo:IAO_0000117>
         <obo:IAO_0000119>IEDB</obo:IAO_0000119>
@@ -1287,6 +1313,30 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/OBI_0003607 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003607"/>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/OBI_0003608 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003608"/>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/OBI_0003609 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003609"/>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/OBI_0003614 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003614"/>
+
+
+
     <!-- http://purl.obolibrary.org/obo/OBI_0600007 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0600007"/>

diff --git a/src/ontology/templates/administration.tsv b/src/ontology/templates/administration.tsv
@@ -11,8 +11,8 @@ OBI:0000983	intranasal mucosal administration	intranasal mucosal administration
 OBI:0000994	intravenous injection	intravenous injection			is the injection of a material entity (bearing the administered substance role) into the vein (bearing the target role) of an organism using a syringe			PERSON: Melanie Courtot					equivalent		administering substance in vivo	vein				('realizes' some ('function' and ('inheres in' some 'syringe')))
 OBI:0001174	passive immunization	passive immunization		adoptive transfer	The injection of immune effector material (antibodies, T cells or B cells) into an organism so that the organisms immune system gains its  immune effector function to recognize specific antigens.		Giving VIG (concentrated antibodies from vaccinated donors) to a patient that is infected with smallpox. Transferring epitope specific T cells from one mouse into another.	PERSON: Bjoern Peters, Randi Vita, Jason Greenbaum					subclass		administering substance in vivo		adaptive immune receptor			
 OBI:0003057	antibiotic administration process	antibiotic administration process			Administering substance in vivo where an antibiotic substance is administered to a living organism.	Penn Group		Chris Stoeckert|Cristian Cocos|Jie Zheng					subclass		administering substance in vivo		antibacterial			
-OBI:0003413	administering substance in vivo to cause disease				An administration of substance in vivo with the intention to induce disease in the organism.	IEDB		IEDB					subclass		administering substance in vivo					
-OBI:0003414	administering substance in vivo to reduce or prevent disease				An administration of substance in vivo with the intention to reduce the symptoms of or prevent development of a disease in the organism.	IEDB		IEDB					subclass		administering substance in vivo					
+OBI:0003413	administering substance in vivo to cause disease				An administration of substance in vivo with the intention to induce disease in the organism.	IEDB		IEDB					subclass		administering substance in vivo				disease causation objective	
+OBI:0003414	administering substance in vivo to reduce or prevent disease				An administration of substance in vivo with the intention to reduce the symptoms of or prevent development of a disease in the organism.	IEDB		IEDB					subclass		administering substance in vivo				('disease prevalence reduction objective' or 'disease severity reduction objective' or 'disease prevention objective')	
 OBI:0003456	in vivo challenge	in vivo challenge			The administration of a challenge to a live host.	IEDB		Hector Guzman-Orozco					subclass		administering substance in vivo					
 OBI:0003553	intragastric administration				An administration of a substance into the stomach of an organism.			Sebastian Duesing				https://github.com/obi-ontology/obi/issues/1703	subclass		administering substance in vivo	stomach				
 OBI:0003554	intracolonic administration				An administration of a substance into the colon of an organism.			Sebastian Duesing				https://github.com/obi-ontology/obi/issues/1703	subclass		administering substance in vivo	colon