Rework 14-env-vars lesson

_episodes/14-environment-variables.md

@@ -56,7 +56,7 @@ HOSTNAME=log-3
 FPATH=/usr/share/zsh/5.5.1/functions:/usr/share/zsh/5.5.1/functions:/share/apps/lmod/8.4.9/lmod/lmod/init/ksh_funcs
 SSH_AUTH_SOCK=/tmp/ssh-XXXXb32gan/agent.3025643
 __LMOD_REF_COUNT_MODULEPATH=/share/apps/modulefiles:1
-VAST=/vast/ss19980
+VAST=/vast/yourUsername
 LMOD_DIR=/share/apps/lmod/8.4.9/lmod/lmod/libexec
 ...
 ~~~
@@ -227,8 +227,8 @@ here are the components of `PATH` listed one per line:
 ~~~
 /share/apps/singularity/bin
 /share/apps/local/bin
-/home/ss19980/.local/bin
-/home/ss19980/bin
+/home/yourUsername/.local/bin
+/home/yourUsername/bin
 /share/apps/singularity/bin
 /share/apps/local/bin
 /usr/local/bin

_includes/snippets_library/NYU_Greene_slurm/modules/available-modules.snip

@@ -1,26 +1,19 @@
 ```
----------------------- /cluster/modulefiles/all -------------------------
-4ti2/1.6.9-GCC-8.2.0-2.31.1            gmsh/4.5.6-foss-2019b-Python-3.7.4
-ABySS/2.0.2-gompi-2019a                gnuplot/5.2.6-GCCcore-8.2.0
-AdapterRemoval/2.3.1-foss-2018b        gnuplot/5.2.8-GCCcore-8.3.0
-AdapterRemoval/2.3.1-GCC-8.2.0-2.31.1  Go/1.13.1
-ADF/2019.103+StaticMKL                 gompi/2018b
-AdmixTools/5.1-GCC-7.3.0-2.30          gompi/2019a
-ADMIXTURE/1.3.0                        gompi/2019b
+[ss19980@log-3 ~]$ module avail
 
-[removed most of the output here for clarity]
-
------------------------ /cluster/modulefiles/external ---------------------
-   appusage/1.0    hpcx/2.4    hpcx/2.5    hpcx/2.6
+----------------------------------------------- /share/apps/modulefiles -----------------------------------------------
+   abyss/intel/2.3.0                          liftoff/1.6.1
+   admixtools/intel/7.0.2                     liftoff/1.6.3
+   admixture/1.3.0                            llvm/11.0.0
+   advanpix-mct/4.9.3.15018                   lofreq/2.1.5
+   amber/openmpi/24.00                        lp_solve/intel/5.5.2.9
+   amber/openmpi/intel/20.06                  lua/5.3.6
+   amber/openmpi/intel/20.11                  macs2/2.1.1.20160309
+   amber/openmpi/intel/22.00                  macs2/intel/2.2.7.1
+   amber/openmpi/intel/22.03                  macs3/intel/3.0.0a5
+   ampl/20240308                              mafft/intel/7.475
+   amplgurobilink/11.0.1                      mambaforge/23.1.0
 
-  Where:
-   S:        Module is Sticky, requires --force to unload or purge
-   L:        Module is loaded
-   Aliases:  Aliases exist: foo/1.2.3 (1.2) means that "module load foo/1.2"
-             will load foo/1.2.3
-
-Use "module spider" to find all possible modules.
-Use "module keyword key1 key2 ..." to search for all possible modules matching
-any of the "keys".
+[removed most of the output here for clarity]
 ```
 {: .output}

_includes/snippets_library/NYU_Greene_slurm/modules/default-modules.snip

@@ -1,4 +1,4 @@
 ```
-No Modulefiles Currently Loaded.
+No modules loaded
 ```
 {: .output}