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v.2.11.4 - Minor Release
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@nservant nservant released this 02 Apr 14:11
· 124 commits to master since this release
v2.11.4
82bcdde

CHANGES IN VERSION 2.11.4

BUG FIXES

o Fix major bug in parallel mode from 2.11.3

CHANGES IN VERSION 2.11.3

NEW FEATURES

o 'N' is now support in the digest_genome.py utility
o 'N' is now supported in the ligation motif (for Arima Hi-C kit)

SIGNIFICANT USER-VISIBLE CHANGES

o Update ice usage. Pull request from NVaroquaux (#323)
o Update of the sparse2dense.py utils to include insulation score (Crane et al.) format
o Update of Singularity image
o Update hicpro2juicebox.sh script for memory issue (#246)
o Update hicpro2higlass.sh script (#254)

BUG FIXES

o Check if annotation files are readable (#282)
o If RM_DUP is unset, the duplicates are not filtered (#256)
o Support both .fastq.gz and .fq.gz files (#311)
o Bug in R plots legends (#257, #250, #240)
o Fix small printing bugs in mapped_2hic_fragments.py
o N_CPU for LSF usage (#250) and bowtie2 (#262)
o Update doc (#307, #273)

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