Modify Open Science

Remove Open Science from output (except from Optional Pages), and refer to Open Science repo. The pages were retained, and the section info commented out from the _quarto.yml, so it can be easily reverted if necessary. However, the Open Science repo will be updated, whereas this will not be. In the future, should remove/delete these pages.

_quarto.yml

@@ -63,15 +63,15 @@ website:
           - content/OpenScience.qmd
           - content/PublicationsPresentations.qmd
           - content/Resources.qmd
-      - section: "NMFS Open Science Directions"
-        contents:
-          - content/NMFS_OpenSciDirections/Getting-Started.qmd
-          - content/NMFS_OpenSciDirections/organize.qmd
-          - content/NMFS_OpenSciDirections/add-content.qmd
-          - content/NMFS_OpenSciDirections/rendering.qmd
-          - content/NMFS_OpenSciDirections/rmarkdown.Rmd
-          - content/NMFS_OpenSciDirections/code.qmd
-          - content/NMFS_OpenSciDirections/acknowledgements.qmd 
+      # - section: "NMFS Open Science Directions"  #Removed but did not yet delete
+      #   contents:
+      #     - content/NMFS_OpenSciDirections/Getting-Started.qmd
+      #     - content/NMFS_OpenSciDirections/organize.qmd
+      #     - content/NMFS_OpenSciDirections/add-content.qmd
+      #     - content/NMFS_OpenSciDirections/rendering.qmd
+      #     - content/NMFS_OpenSciDirections/rmarkdown.Rmd
+      #     - content/NMFS_OpenSciDirections/code.qmd
+      #     - content/NMFS_OpenSciDirections/acknowledgements.qmd 
 
 format:
   html:

content/OpenScience.qmd

@@ -2,6 +2,6 @@
 title: Open Science
 ---
 
-This section is optional but is a great place for all of your open science related resources and tools. You can include information here for our Openscapes work, stack exchange, GitHub, co working guides, etc.
+This section is optional but we recommend creating this place to point to the [Open Science repository](https://sael-swfsc.github.io/OpenScience/). 
 
-[SAEL Example](https://sael-swfsc.github.io/SAEL-lab-manual/content/OpenScience_Getting-Started.html)
+[SAEL Example](https://sael-swfsc.github.io/SAEL-lab-manual/content/OpenScience.html)

index.qmd

@@ -88,7 +88,7 @@ This template will create a Quarto website that each lab can copy and edit with
 
         ![](content/images/website.png)
 
-8.  Your lab manual is now created! Go [here](https://sael-swfsc.github.io/OpenScience/content/GithubDesktop.html) for more directions on how to start editing you manual using GitHub Desktop and R Studio (start at step 4)
+8.  Your lab manual is now created! Go [here](https://sael-swfsc.github.io/OpenScience/content/labManual.html) for more information on building your lab manual.
 
 ## Example Manuals