STY: Apply pre-commit

.circleci/nipype.cfg

@@ -1,4 +1,4 @@
 [execution]
 stop_on_first_crash = true
 poll_sleep_duration = 0.01
-hash_method = content
+hash_method = content

Makefile

@@ -15,4 +15,3 @@ docker:
 	--build-arg BUILD_DATE=`date -u +"%Y-%m-%dT%H:%M:%SZ"` \
 	--build-arg VCS_REF=`git rev-parse --short HEAD` \
 	--build-arg VERSION=`python setup.py --version` .
-

README.rst

@@ -7,15 +7,15 @@ sMRIPrep: Structural MRI PREProcessing pipeline
 
 .. image:: https://circleci.com/gh/nipreps/smriprep/tree/master.svg?style=shield
   :target: https://circleci.com/gh/nipreps/smriprep/tree/master
-  
+
 .. image:: https://codecov.io/gh/nipreps/smriprep/branch/master/graph/badge.svg
   :target: https://codecov.io/gh/nipreps/smriprep
   :alt: Coverage report
 
 .. image:: https://img.shields.io/pypi/v/smriprep.svg
   :target: https://pypi.python.org/pypi/smriprep/
   :alt: Latest Version
-  
+
 .. image:: https://img.shields.io/badge/doi-10.1038%2Fs41592--018--0235--4-blue.svg
   :target: https://doi.org/10.1038/s41592-018-0235-4
   :alt: Published in Nature Methods

docs/_static/alabaster.css

@@ -698,4 +698,4 @@ nav#breadcrumbs li+li:before {
     div.related {
         display: none;
     }
-}
+}

docs/_static/basic.css

@@ -673,4 +673,4 @@ div.math:hover a.headerlink {
     #top-link {
         display: none;
     }
-}
+}

docs/_static/documentation_options.js

@@ -7,4 +7,4 @@ var DOCUMENTATION_OPTIONS = {
     HAS_SOURCE: true,
     SOURCELINK_SUFFIX: '.txt',
     NAVIGATION_WITH_KEYS: false,
-};
+};

docs/_static/language_data.js

@@ -13,7 +13,7 @@
 var stopwords = ["a","and","are","as","at","be","but","by","for","if","in","into","is","it","near","no","not","of","on","or","such","that","the","their","then","there","these","they","this","to","was","will","with"];
 
 
-/* Non-minified version JS is _stemmer.js if file is provided */ 
+/* Non-minified version JS is _stemmer.js if file is provided */
 /**
  * Porter Stemmer
  */
@@ -293,5 +293,3 @@ function splitQuery(query) {
     }
     return result;
 }
-
-

docs/_static/pygments.css

@@ -74,4 +74,4 @@
 .highlight .vg { color: #000000 } /* Name.Variable.Global */
 .highlight .vi { color: #000000 } /* Name.Variable.Instance */
 .highlight .vm { color: #000000 } /* Name.Variable.Magic */
-.highlight .il { color: #990000 } /* Literal.Number.Integer.Long */
+.highlight .il { color: #990000 } /* Literal.Number.Integer.Long */

docs/_templates/apidoc/module.rst_t

@@ -6,4 +6,3 @@
 {%- for option in automodule_options %}
    :{{ option }}:
 {%- endfor %}
-

docs/_templates/apidoc/toc.rst_t

@@ -5,4 +5,3 @@
 {% for docname in docnames %}
    {{ docname }}
 {%- endfor %}
-

docs/api.rst

@@ -8,4 +8,4 @@ Information on specific functions, classes, and methods.
    api/smriprep.cli
    api/smriprep.interfaces
    api/smriprep.utils
-   api/smriprep.workflows
+   api/smriprep.workflows

docs/installation.rst

@@ -56,10 +56,10 @@ You can check your `Docker Engine`_ installation running their ``hello-world`` i
     $ docker run --rm hello-world
 
 If you have a functional installation, then you should obtain the following output. ::
-    
+
     Hello from Docker!
     This message shows that your installation appears to be working correctly.
-    
+
     To generate this message, Docker took the following steps:
      1. The Docker client contacted the Docker daemon.
      1. The Docker daemon pulled the "hello-world" image from the Docker Hub.
@@ -68,20 +68,20 @@ If you have a functional installation, then you should obtain the following outp
         executable that produces the output you are currently reading.
      1. The Docker daemon streamed that output to the Docker client, which sent it
         to your terminal.
-    
+
     To try something more ambitious, you can run an Ubuntu container with:
      $ docker run -it ubuntu bash
-    
+
     Share images, automate workflows, and more with a free Docker ID:
      https://hub.docker.com/
-    
+
     For more examples and ideas, visit:
      https://docs.docker.com/get-started/
 
 After checking your Docker Engine is capable of running Docker images, then go ahead
 and `check out our documentation <https://fmriprep.readthedocs.io/en/stable/docker.html>`__
 to run the *sMRIPrep* image.
-The list of Docker images ready to use is found at the `Docker Hub`_, 
+The list of Docker images ready to use is found at the `Docker Hub`_,
 under the ``nipreps/smriprep`` identifier.
 
 The ``smriprep-docker`` wrapper

docs/usage.rst

@@ -94,4 +94,3 @@ would be equivalent to the latest example: ::
         -v /path/to_output/dir:/out nipreps/smriprep:1.0.0 \
         /data /out participant
     ...
-

wrapper/LICENSE

@@ -24,4 +24,4 @@ DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
 SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
 CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
 OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
-OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.