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ENH: Add MP-PCA/NORDIC denoising through dwidenoise #3395

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8f61686
Start adding NORDIC options.
tsalo Jul 8, 2024
5bae834
Keep working on NORDIC.
tsalo Aug 7, 2024
df8ae03
Looks good minus actual NORDIC node.
tsalo Aug 7, 2024
1c7bed5
More work.
tsalo Aug 7, 2024
fc3729a
Add get_associated function.
tsalo Aug 8, 2024
a21d415
Update nordic.py
tsalo Aug 8, 2024
1100818
Merge remote-tracking branch 'upstream/master' into nordic
tsalo Nov 9, 2024
ae12709
Replace MATLAB NORDIC with dwidenoise.
tsalo Nov 9, 2024
39c6c85
Add mrtrix3 to environment.
tsalo Nov 9, 2024
c92f653
Run ruff.
tsalo Nov 9, 2024
0e88b6c
Fix connection.
tsalo Nov 9, 2024
0f53b42
Test the new behavior.
tsalo Nov 9, 2024
3c1f61a
I passed it to the anat-only run. :(
tsalo Nov 9, 2024
c59d589
Fix bug.
tsalo Nov 9, 2024
c9f655d
Fix order of connections.
tsalo Nov 9, 2024
023c6b3
Write out noise images.
tsalo Nov 10, 2024
2679b41
Fix variable name.
tsalo Nov 10, 2024
477531a
Update citations.
tsalo Nov 10, 2024
f19181e
Fix string.
tsalo Nov 10, 2024
f8ce527
Fix the scaling factor.
tsalo Nov 10, 2024
0c2c0db
Merge branch 'master' into nordic
tsalo Dec 10, 2024
0cf3dca
Merge branch 'master' into nordic
tsalo Jan 2, 2025
2b88d70
Try to run mppca.
tsalo Jan 2, 2025
7cd31e6
Expect noise map.
tsalo Jan 2, 2025
ee2dc94
Expect echo-wise noise maps.
tsalo Jan 2, 2025
b883024
Run MP-PCA on ds054 too.
tsalo Jan 2, 2025
4c3654b
ds210 doesn't have bold_output enabled.
tsalo Jan 2, 2025
88fa7ff
Rename variables.
tsalo Jan 3, 2025
fa3c305
Merge branch 'master' into nordic
tsalo Jan 8, 2025
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Merge branch 'master' into nordic
tsalo authored Jan 8, 2025
commit fa3c30526e0d10fbcb240cf01516dcb88b5eeebb

This merge commit was added into this branch cleanly.

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