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MAINT: A minimal infrastructure for unit-tests, with some initial tes…
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coverage: | ||
range: "0...100" | ||
ignore: | ||
- "**/data" | ||
- "**/tests" | ||
- "setup.py" |
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[run] | ||
branch = True | ||
omit = | ||
*/tests/* | ||
*/_afq/* | ||
dmriprep/_version.py | ||
dmriprep/conftest.py | ||
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||
[report] | ||
# Regexes for lines to exclude from consideration | ||
exclude_lines = | ||
raise NotImplementedError | ||
warnings\.warn |
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# vim ft=yaml | ||
dist: xenial | ||
sudo: true | ||
language: python | ||
sudo: false | ||
|
||
cache: | ||
directories: | ||
- $HOME/.cache/pip | ||
|
||
python: | ||
- 3.6 | ||
- 3.7 | ||
|
||
|
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env: | ||
global: | ||
- CHECK_TYPE="install" | ||
- INSTALL_TYPE="pip" | ||
- INSTALL_DEPENDS="pip setuptools" | ||
matrix: | ||
- CHECK_TYPE="style" | ||
- CHECK_TYPE="test" | ||
- INSTALL_TYPE="install" | ||
- INSTALL_TYPE="develop" | ||
- INSTALL_TYPE="sdist" | ||
- INSTALL_TYPE="wheel" | ||
- INSTALL_DEPENDS="pip==18.1 setuptools==30.2.1" | ||
- INSTALL_DEPENDS="pip==10.0.1 setuptools==30.4.0" | ||
|
||
matrix: | ||
exclude: | ||
- python: 3.7 | ||
env: CHECK_TYPE="style" | ||
allow_failures: | ||
- python: 3.6 | ||
env: INSTALL_DEPENDS="pip==10.0.1 setuptools==30.4.0" | ||
- python: 3.7 | ||
env: INSTALL_DEPENDS="pip==10.0.1 setuptools==30.4.0" | ||
|
||
before_install: | ||
- python -m pip install --upgrade pip | ||
- pip install "flake8<3.0" flake8-putty | ||
- python -m pip install --upgrade pip virtualenv | ||
- virtualenv --python=python /tmp/venv | ||
- source /tmp/venv/bin/activate | ||
- python --version | ||
- python -m pip --version | ||
- python -m pip install --upgrade $INSTALL_DEPENDS | ||
- python -m pip --version | ||
- | | ||
if [ "$INSTALL_TYPE" == "pip" ]; then | ||
PACKAGE="." | ||
elif [ "$INSTALL_TYPE" == "sdist" ]; then | ||
python setup.py sdist | ||
PACKAGE="$( ls dist/*.tar.gz )" | ||
elif [ "$INSTALL_TYPE" == "wheel" ]; then | ||
python setup.py bdist_wheel | ||
PACKAGE="$( ls dist/*.whl )" | ||
fi | ||
install: | ||
- | | ||
if [ "$INSTALL_TYPE" == "install" ]; then | ||
python setup.py install | ||
elif [ "$INSTALL_TYPE" == "develop" ]; then | ||
python setup.py develop | ||
else | ||
python -m pip install $PACKAGE | ||
fi | ||
- | | ||
INTENDED_VERSION="$(python -c 'import versioneer; print(versioneer.get_version())')" | ||
pushd /tmp | ||
INSTALLED_VERSION="$(python -c 'import dmriprep; print(dmriprep.__version__)')" | ||
python -c 'import dmriprep; print(dmriprep.__file__)' | ||
echo "Intended: $INTENDED_VERSION" | ||
echo "Installed: $INSTALLED_VERSION" | ||
test "$INTENDED_VERSION" == "$INSTALLED_VERSION" | ||
popd | ||
- if [ "$CHECK_TYPE" = "install" ]; then exit 0; fi | ||
|
||
before_script: | ||
- travis_retry python -m pip install "dmriprep[$CHECK_TYPE]" | ||
script: | ||
- flake8 dmriprep | ||
- | | ||
if [ "$CHECK_TYPE" == "style" ]; then | ||
flake8 dmriprep | ||
elif [ "$CHECK_TYPE" == "test" ]; then | ||
pytest -n 2 -vv --doctest-modules --cov dmriprep --cov-config .coveragerc --cov-report xml:cov.xml dmriprep | ||
else | ||
false | ||
fi | ||
after_script: | ||
- python -m pip install codecov | ||
- codecov |
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"""py.test configuration.""" | ||
import os | ||
import tempfile | ||
from pathlib import Path | ||
import numpy as np | ||
import nibabel as nb | ||
import pytest | ||
|
||
|
||
@pytest.fixture(autouse=True) | ||
def doctest_autoimport(doctest_namespace): | ||
"""Make available some fundamental modules to doctest modules.""" | ||
doctest_namespace['np'] = np | ||
doctest_namespace['nb'] = nb | ||
doctest_namespace['os'] = os | ||
doctest_namespace['Path'] = Path | ||
doctest_namespace['data_dir'] = Path(__file__).parent / 'data' / 'tests' | ||
tmpdir = tempfile.TemporaryDirectory() | ||
doctest_namespace['tmpdir'] = tmpdir.name | ||
yield | ||
tmpdir.cleanup() |
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