FIX: Ensure FS python is included

nipreps-containers · Jun 2, 2022 · 7e621d6 · 7e621d6
1 parent 21cfab3
commit 7e621d6
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Showing 2 changed files with 3 additions and 1 deletion.
diff --git a/Dockerfile b/Dockerfile
@@ -35,6 +35,6 @@ RUN apk update && \
 COPY minimized.txt /usr/local/etc/freesurfer-includes.txt
 WORKDIR /opt
 RUN curl -SL https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/infant/freesurfer-linux-centos7_x86_64-infant-dev-4a14499.tar.gz -o freesurfer.tar.gz \
-    && tar -xzvf freesurfer.tar.gz -T /usr/local/etc/freesurfer-includes.txt \
+    && tar -xzvf freesurfer.tar.gz -h --hard-dereference -T /usr/local/etc/freesurfer-includes.txt \
     && rm freesurfer.tar.gz
 
diff --git a/minimized.txt b/minimized.txt
@@ -137,6 +137,8 @@ freesurfer/bin/set_infant_recon_params.csh
 freesurfer/lib/bem/ic4.tri
 freesurfer/lib/bem/ic7.tri
 freesurfer/lib/vtk
+freesurfer/python/bin/python3.6
+freesurfer/python/bin/python3
 freesurfer/python/lib/libcrypto.so.10
 freesurfer/python/lib/liblzma.so.0
 freesurfer/python/lib/libssl.so.10