Fix the githubCI

.github/workflows/basic_test.yml

@@ -12,3 +12,6 @@ jobs:
       - run: pwd
       - run: ls src/FMS
       - run: cd builds; ./linux-build.bash -m lscgpu50 -p gnu11 -t repro -f mom6sis2
+      - run: ls builds/build/lscgpu50-gnu11/ocean_ice/repro/MOM6SIS2
+      - run: (cd exps/MOM6SIS2COBALT.single_column/; source ../../builds/lscgpu50/gnu11.env; mkdir RESTART; mpirun -n 1 ../../builds/build/lscgpu50-gnu11/ocean_ice/repro/MOM6SIS2 | & tee stdout.lscgpu50.gnu11.repro.n1)
+

builds/lscgpu50/gnu11.env

@@ -1,6 +1,7 @@
 module load gcc/11.3.0
-module load cuda/11.7
+module load cuda/12.2
 module load openmpi/4.1.4
 module load hdf5/1.12.2   netcdf/4.9.0
 export MPICC=$(which mpicc)
+setenv MPICC $(which mpicc)
 

exps/get_single_column_dataset

@@ -0,0 +1,15 @@
+### This script can get all the required input data for running the experiment MOM6SIS2COBALT.single_column 
+(mkdir -p datasets/grids; cd datasets/grids; wget ftp://ftp.gfdl.noaa.gov/pub/Niki.Zadeh/OM4_datasets/OM4_single_column_grid.tar.gz; tar zxvf OM4_single_column_grid.tar.gz)
+
+#### IC
+(mkdir -p datasets/; cd datasets/; wget ftp://ftp.gfdl.noaa.gov/perm/Alistair.Adcroft/MOM6-testing/obs.tgz; tar zxvf obs.tgz)
+
+#### CORE2 NYF Forcing files(854MB)
+(mkdir -p datasets/forcings; cd datasets/forcings; wget ftp://ftp.gfdl.noaa.gov/perm/Alistair.Adcroft/MOM6-testing/CORE.tgz; tar xvf CORE.tgz)
+
+#### Oceanbiogeochemistry initialization/flux dataset (963MB)
+Needed only for COBALT experiments
+(mkdir -p datasets/OceanBGC_dataset;   cd datasets/OceanBGC_dataset;   wget ftp://ftp.gfdl.noaa.gov/pub/Niki.Zadeh/OM4_datasets/OceanBGC_dataset.tar.gz;     tar zxvf OceanBGC_dataset.tar.gz)
+
+#### Check the required input data
+(cd MOM6SIS2COBALT.single_column; find INPUT/ -xtype l)