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Updates for April 15 2022 Training Release
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| ## Workshops | ||
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| <div> | ||
| <p><div style="font-size:24px; font-style: italic"><i>Check out our <a href="https://www.nih-cfde.org/events/" target="_blank" rel="noopener" style="color:#336699;">events calendar</a> for upcoming workshops!</i></div></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:24px; font-style: italic">Join our <a href="mailto:CFDE-Training%20<[email protected]" target="_blank" rel="noopener" style="color:#336699;">training mailing list</a> for all the latest updates.</div></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:24px; font-style: italic">Past workshops:</a></div></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://github.com/nih-cfde/training-and-engagement/wiki/An-Introduction-to-UNIX:-November-17,-2021" target="_blank" rel="noopener" style="color:#336699;">Introduction to UNIX Command Line</a></div><i>November 17, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://github.com/nih-cfde/training-and-engagement/wiki/A-Hands-On-Introduction-to-AWS:-November-10,-2021" target="_blank" rel="noopener" style="color:#336699;">Introduction to Amazon Web Services/Elastic Cloud Computing</a></div><i>November 10, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://github.com/nih-cfde/training-and-engagement/wiki/Introduction-to-R:-October-13,-2021" target="_blank" rel="noopener" style="color:#336699;">Introduction to R</a></div><i>October 13, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://github.com/nih-cfde/training-and-engagement/wiki/A-Hands-On-Introduction-to-Conda:-October-6,-2021" target="_blank" rel="noopener" style="color:#336699;">A Hands On Introduction to Conda</a></div><i>October 6, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://github.com/nih-cfde/training-and-engagement/wiki/RNA-Seq-in-the-cloud:-June-21-&-23,-2021" target="_blank" rel="noopener" style="color:#336699;">RNA-Seq in the Cloud</a></div><i>September 21 & 23, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://osf.io/txcw8/" target="_blank" rel="noopener" style="color:#336699;">RNA-Seq Concepts, Design and Workflows</a></div><i>September 22, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://ngs-docs.github.io/2021-august-remote-computing/making-use-of-on-demand-cloud-computers-from-amazon-web-services.html" target="_blank" rel="noopener" style="color:#336699;">Cloud Computing with AWS</a></div><i>August 31, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://ngs-docs.github.io/2021-august-remote-computing/executing-large-analyses-on-hpc-clusters-with-slurm.html" target="_blank" rel="noopener" style="color:#336699;">Using SLURM on HPC</a></div><i>August 26, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://ngs-docs.github.io/2021-august-remote-computing/automating-your-analyses-with-the-snakemake-workflow-system.html" target="_blank" rel="noopener" style="color:#336699;">Automating using Snakemake</a></div><i>August 25, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://ngs-docs.github.io/2021-august-remote-computing/keeping-track-of-your-files-with-version-control.html" target="_blank" rel="noopener" style="color:#336699;">Using Version Control</a></div><i>August 24, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://ngs-docs.github.io/2021-august-remote-computing/automating-your-analyses-and-executing-long-running-analyses-on-remote-computers.html" target="_blank" rel="noopener" style="color:#336699;">Automating Analyses</a></div><i>August 19, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://ngs-docs.github.io/2021-august-remote-computing/structuring-your-projects-for-current-and-future-you.html" target="_blank" rel="noopener" style="color:#336699;">Structuring Project Folders</a></div><i>August 17, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://ngs-docs.github.io/2021-august-remote-computing/installing-software-on-remote-computers-with-conda.html" target="_blank" rel="noopener" style="color:#336699;">Installing Software with Conda</a></div><i>August 13, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://ngs-docs.github.io/2021-august-remote-computing/running-programs-on-remote-computers-and-retrieving-the-results.html" target="_blank" rel="noopener" style="color:#336699;">Running Programs and Retrieving Results</a></div><i>August 12, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://ngs-docs.github.io/2021-august-remote-computing/connecting-to-remote-computers-with-ssh.html" target="_blank" rel="noopener" style="color:#336699;">Connecting Remote Computers with SSH</a></div><i>August 10, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://ngs-docs.github.io/2021-august-remote-computing/creating-and-modifying-text-files-on-remote-computers.html" target="_blank" rel="noopener" style="color:#336699;">Creating & Modifying Text Files</a></div><i>August 4, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://ngs-docs.github.io/2021-august-remote-computing/introduction-to-the-unix-command-line.html" target="_blank" rel="noopener" style="color:#336699;">Introduction to UNIX Command Line</a></div><i>August 3, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://github.com/nih-cfde/training-and-engagement/wiki/Introduction-to-R:-July-28,-2021" target="_blank" rel="noopener" style="color:#336699;">Introduction to R</a></div><i>July 28, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://osf.io/txcw8/" target="_blank" rel="noopener" style="color:#336699;">RNA-Seq Concepts, Design and Workflows</a></div><i>July 21, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://github.com/nih-cfde/training-and-engagement/wiki/A-Hands-On-Introduction-to-Conda:-July-14,-2021" target="_blank" rel="noopener" style="color:#336699;">A Hands-On Introduction to Conda</a></div><i>July 14, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <p><div style="font-size:19px"><a href="https://github.com/nih-cfde/training-and-engagement/wiki/A-Hands-On-Introduction-to-AWS:-June-30,-2021" target="_blank" rel="noopener" style="color:#336699;">Introduction to Amazon Web Services/Elastic Cloud Computing</a></div><i>June 30, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://github.com/nih-cfde/training-and-engagement/wiki/RNA-Seq-in-the-cloud:-June-21-&-23,-2021" target="_blank" rel="noopener" style="color:#336699;">RNA-Seq in the Cloud</a></div><i>June 21 & 23, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://us06web.zoom.us/rec/share/wYs0AGJ8cQHZ_UhaE1JJ4q4JmM8K7-F_S95t1OxLPwyuezTTlGjVtGz4ruqwGMp1.0ZBYwGZFeeVAoncw?startTime=1623862864000" target="_blank" rel="noopener" style="color:#336699;">Introduction to RNA-Seq Analysis with Appyters</a></div><i>June 16, 2021 • Pop-up Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://osf.io/kj5av/" target="_blank" rel="noopener" style="color:#336699;">RNA-Seq Concepts, Design, and Workflows</a></div><i>June 9, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://github.com/nih-cfde/training-and-engagement/wiki/Introduction-to-R:-June-2,-2021" target="_blank" rel="noopener" style="color:#336699;">Introduction to R</a></div><i>June 2, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px">CFDE Portal Demo</div><i>May 26, 2021 • Pop-up Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://github.com/nih-cfde/training-and-engagement/wiki/Introduction-to-Workflows:-Snakemake-Part-I-&-II-May-12-&-14th,-2021" target="_blank" rel="noopener" style="color:#336699;">Introduction to Workflows: Snakemake</a></div><i>May 12 & 14, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://github.com/nih-cfde/training-and-engagement/wiki/A-Hands-On-Introduction-to-AWS:-May-05,-2021" target="_blank" rel="noopener" style="color:#336699;">Introduction to Amazon Web Services/Elastic Cloud Computing</a></div><i>May 5, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://github.com/nih-cfde/training-and-engagement/wiki/Introduction-to-3D-Tissue-Mapping:-April-28,-2021" target="_blank" rel="noopener" style="color:#336699;">Introduction to 3D Tissue Mapping</a></div><i>April 28, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://github.com/nih-cfde/training-and-engagement/wiki/A-Hands-On-Introduction-to-AWS:-April-22,-2021" target="_blank" rel="noopener" style="color:#336699;">Introduction to Amazon Web Services/Elastic Cloud Computing</a></div><i>April 22, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://github.com/nih-cfde/training-and-engagement/wiki/A-Hands-On-Introduction-to-AWS:-April-21,-2021" target="_blank" rel="noopener" style="color:#336699;">Introduction to Amazon Web Services/Elastic Cloud Computing</a></div><i>April 21, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="http://bit.ly/3abyDy0" target="_blank" rel="noopener" style="color:#336699;">CFDE Portal Demo</a></div><i>April 14, 2021 • Pop-up Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://github.com/nih-cfde/training-and-engagement/wiki/A-Hands-On-Introduction-to-Conda:-April-7,-2021" target="_blank" rel="noopener" style="color:#336699;">A Hands-On Intro to Conda</a></div><i>April 7, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://github.com/nih-cfde/training-and-engagement/wiki/A-Hands-On-Introduction-to-Conda:-March-18,-2021" target="_blank" rel="noopener" style="color:#336699;">A Hands-On Intro to Conda</a></div><i>March 18, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://github.com/nih-cfde/training-and-engagement/wiki/A-Hands-On-Introduction-to-Conda:-March-4,-2021" target="_blank" rel="noopener" style="color:#336699;">A Hands-On Intro to Conda</a></div><i>March 4, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://github.com/nih-cfde/training-and-engagement/wiki/A-Hands-On-Introduction-to-AWS:-February-25,-2021" target="_blank" rel="noopener" style="color:#336699;">Introduction to Amazon Web Services/Elastic Cloud Computing</a></div><i>Feb 25, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://github.com/nih-cfde/training-and-engagement/wiki/A-Hands-On-Introduction-to-AWS:-January-29,-2021" target="_blank" rel="noopener" style="color:#336699;">Introduction to Amazon Web Services/Elastic Cloud Computing</a></div><i>Jan 29, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px">Introduction to the Kids First Data Resource Portal</div><i>Dec 17, 2020 • Virtual Workshop</i><br/>Workshop Resources: <a href="./Common-Fund-Tools/Kids-First/Portal-Setup-And-Permissions/KF_3_KF_Registration/" target="_blank" rel="noopener" style="color:#336699;">Setup</a> • <a href="./Common-Fund-Tools/Kids-First/Exploring-Data-in-the-KF-Portal/KF_5_Explore/" target="_blank" rel="noopener" style="color:#336699;">Explore</a> • <a href="./Common-Fund-Tools/Kids-First/Advanced-KF-Portal-Queries/KF_9_AdvancedQuery/" target="_blank" rel="noopener" style="color:#336699;">Queries</a></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://github.com/nih-cfde/training-and-engagement/wiki/A-Hands-On-Introduction-to-AWS:-December-1,-2020" target="_blank" rel="noopener" style="color:#336699;">Introduction to Amazon Web Services/Elastic Cloud Computing</a></div><i>Dec 1, 2020 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| Check out our [events calendar](https://www.nih-cfde.org/events/)for upcoming workshops. | ||
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| Join our [training mailing list](mailto:CFDE-Training%20<[email protected]) for all the latest updates. | ||
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| A list of a past workshops can be viewed [here](https://github.com/nih-cfde/training-and-engagement/blob/dev/docs/Release-Notes/history.md). | ||
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| ## Contributing | ||
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| Hello, if you'd like to contribute to the CFDE Training website, read on! | ||
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| By contributing to this repository, you agree to release all your contributions under the same terms as the license itself: [the Creative Commons Zero (aka Public Domain) license](./license.md). If you are OK with this condition, then we welcome both you and your contribution! | ||
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| If you have any questions about contributing, please open an issue or email the help desk ([email protected]) and we will lend a hand at the earliest. | ||
| If you have any questions, please [open an issue](https://github.com/nih-cfde/training-and-engagement/issues/new) or [email the training team](mailto:[email protected]) and we will lend a hand. | ||
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