Release 2.0.0 #528
Release 2.0.0 #528
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Updating vcf2cytosure and tiddit cov
Add found_in tag to vcf
Change hardcoded platform value to params.platform in modules/align_MT.config
adds schema for svdb query inputs
| // Generate methods description for MultiQC | ||
| // | ||
| def toolCitationText() { | ||
| // TODO nf-core: Optionally add in-text citation tools to this list. |
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There are three TODOs left in subworkflows/local/utils_nfcore_raredisease_pipeline/main.nf. I don't know whether it is important.
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We have the list of citations in CITATIONS.md already, so I think its better to keep just that one updated as we go. I will remove the TODO statements 😄
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These citations are added to the Multiqc report. Maybe worth to add them there?
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Alrite! It was a struggle, but its finally in there now 😆
subworkflows/local/variant_calling/call_sv_germlinecnvcaller.nf
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…tion fix: parameters not resolving properly when igenomes are used
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I realized that Peddy was not in the multiqc config, but I have fixed that now. The PR is ready for review! 😀 |
Cool. Did you test that the peddy in the multiqc-config works? |
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Yupe! It works :) |
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Check up your subway maps, the dark/light bits are a bit mixed |
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Congrats, Ram 🥳 👏👏👏 |
PR checklist
nf-core lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile test_one_sample,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).