nf-core · JoseEspinosa · Mar 1, 2024 · Feb 29, 2024 · Feb 29, 2024 · Feb 29, 2024
diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json
@@ -18,11 +18,11 @@
                 "python.linting.flake8Path": "/opt/conda/bin/flake8",
                 "python.linting.pycodestylePath": "/opt/conda/bin/pycodestyle",
                 "python.linting.pydocstylePath": "/opt/conda/bin/pydocstyle",
-                "python.linting.pylintPath": "/opt/conda/bin/pylint",
+                "python.linting.pylintPath": "/opt/conda/bin/pylint"
             },
 
             // Add the IDs of extensions you want installed when the container is created.
-            "extensions": ["ms-python.python", "ms-python.vscode-pylance", "nf-core.nf-core-extensionpack"],
-        },
-    },
+            "extensions": ["ms-python.python", "ms-python.vscode-pylance", "nf-core.nf-core-extensionpack"]
+        }
+    }
 }
diff --git a/.nf-core.yml b/.nf-core.yml
@@ -3,4 +3,9 @@ lint:
   files_unchanged:
     - .github/ISSUE_TEMPLATE/bug_report.yml
     - pyproject.toml
+    - .github/workflows/branch.yml
+    - .github/workflows/linting_comment.yml
+    - .github/workflows/linting.yml
+    - .github/CONTRIBUTING.md
+    - .github/PULL_REQUEST_TEMPLATE.md
   multiqc_config: false
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -25,6 +25,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - [[#113](https://github.com/nf-core/proteinfold/pull/113)] - Include esmfold dbs for full data sets.
 - [[PR #114](https://github.com/nf-core/rnaseq/pull/114)] - Update paths to test dbs.
 - [[PR #117](https://github.com/nf-core/proteinfold/pull/117)] - Update pipeline template to [nf-core/tools 2.10](https://github.com/nf-core/tools/releases/tag/2.10).
+- [PR #130](https://github.com/nf-core/proteinfold/pull/130) - Remove `lib/` directory.
- [PR #130](https://github.com/nf-core/proteinfold/pull/130) - Remove `lib/` directory.
+- [[PR #130](https://github.com/nf-core/proteinfold/pull/130)] - Remove `lib/` directory.
- [PR #130](https://github.com/nf-core/proteinfold/pull/130) - Remove `lib/` directory.
+- [[PR #130](https://github.com/nf-core/proteinfold/pull/130)] - Remove `lib/` directory.
 
 ## 1.0.0 - White Silver Reebok
 

diff --git a/lib/NfcoreTemplate.groovy b/lib/NfcoreTemplate.groovy
diff --git a/lib/Utils.groovy b/lib/Utils.groovy
diff --git a/lib/WorkflowAlphafold2.groovy b/lib/WorkflowAlphafold2.groovy
diff --git a/lib/WorkflowColabfold.groovy b/lib/WorkflowColabfold.groovy
diff --git a/lib/WorkflowEsmfold.groovy b/lib/WorkflowEsmfold.groovy