update

conf/modules_alphafold2.config

@@ -73,7 +73,7 @@ if (params.alphafold2_mode == 'split_msa_prediction') {
             if(params.use_gpu) { accelerator = 1 }
             ext.args   = params.use_gpu ? '--use_gpu_relax=true' : '--use_gpu_relax=false'
             publishDir = [
-                [   
+                [
                     path: { "${params.outdir}/alphafold2_${params.alphafold2_mode}" },
                     mode: 'copy',
                     saveAs: { filename -> filename.equals('versions.yml') ? null : filename },

conf/test_split_fasta.config

@@ -35,4 +35,4 @@ process {
     withName: 'MMSEQS_COLABFOLDSEARCH|COLABFOLD_BATCH' {
         container = 'biocontainers/gawk:5.1.0'
     }
-}
+}

subworkflows/local/utils_nfcore_proteinfold_pipeline/main.nf

@@ -235,17 +235,17 @@ def cleanHeader(header) {
 }
 
 def validateFasta(fasta) {
-    // extract headers 
+    // extract headers
     def headers = fasta.findAll { it.startsWith('>') }
     // if headers are not unique, throw an error
     if (headers.size() != headers.unique().size()) {
         throw new Exception("Invalid FASTA file. The headers are not unique.")
     }
-    // check headers that are malformed 
+    // check headers that are malformed
     headers.each { header ->
         if (header =~ /[ \t;,]/) {
             // warn user that the header contains special characters
             log.warn "The header ${header} contains special characters. They have been automatically removed."
         }
     }
-}
+}