Replace local unicycler module with nf-core module + bump version

conf/test.config

@@ -23,7 +23,7 @@ params {
     input = params.pipelines_testdata_base_path + 'bacass/bacass_short.tsv'
 
     // some extra args to speed tests up
-    unicycler_args  = "--no_correct --no_pilon"
+    unicycler_args  = ""
     prokka_args     = " --fast"
     assembly_type   = 'short'
     skip_pycoqc     = true

modules.json

@@ -92,6 +92,11 @@
                         "git_sha": "4352dbdb09ec40db71e9b172b97a01dcf5622c26",
                         "installed_by": ["modules"]
                     },
+                    "unicycler": {
+                        "branch": "master",
+                        "git_sha": "5f65b5398f3fe4b8d51d77ed90b0a8cd8c89bba7",
+                        "installed_by": ["modules"]
+                    },
                     "untar": {
                         "branch": "master",
                         "git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",

workflows/bacass.nf

@@ -27,7 +27,7 @@ for (param in checkPathParamList) { if (param) { file(param, checkIfExists: true
 // MODULE: Local to the pipeline
 //
 include { PYCOQC                    } from '../modules/local/pycoqc'
-include { UNICYCLER                 } from '../modules/local/unicycler'
+include { UNICYCLER                 } from '../modules/nf-core/unicycler/main'
 include { NANOPOLISH                } from '../modules/local/nanopolish'
 include { MEDAKA                    } from '../modules/local/medaka'
 include { KRAKEN2_DB_PREPARATION    } from '../modules/local/kraken2_db_preparation'