Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

reset vep to 105 #200

Merged
merged 3 commits into from
Sep 25, 2024
Merged

reset vep to 105 #200

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
3 commits
Select commit Hold shift + click to select a range
ece6053
reset vep to 105
nvnieuwk Sep 25, 2024
ecc23e0
update pipeline version
nvnieuwk Sep 25, 2024
bda511c
prettier
nvnieuwk Sep 25, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
6 changes: 4 additions & 2 deletions CHANGELOG.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -3,9 +3,11 @@
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## v1.9.0dev
## v1.8.1dev

### Changes
### Fixes

1. Revert VEP version to v105

## v1.8.0 - Optimistic Oostkamp - [September 24 2024]

Expand Down
6 changes: 4 additions & 2 deletions modules.json
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -69,12 +69,14 @@
"ensemblvep/download": {
"branch": "master",
"git_sha": "54c183cba37cac58860d9967feaae54acf9cc3e0",
"installed_by": ["modules"]
"installed_by": ["modules"],
"patch": "modules/nf-core/ensemblvep/download/ensemblvep-download.diff"
},
"ensemblvep/vep": {
"branch": "master",
"git_sha": "54c183cba37cac58860d9967feaae54acf9cc3e0",
"installed_by": ["vcf_annotate_ensemblvep_snpeff"]
"installed_by": ["vcf_annotate_ensemblvep_snpeff"],
"patch": "modules/nf-core/ensemblvep/vep/ensemblvep-vep.diff"
},
"gatk4/calibratedragstrmodel": {
"branch": "master",
Expand Down
34 changes: 34 additions & 0 deletions modules/nf-core/ensemblvep/download/ensemblvep-download.diff
View file
Open in desktop

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

4 changes: 2 additions & 2 deletions modules/nf-core/ensemblvep/download/main.nf
View file
Open in desktop

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

35 changes: 35 additions & 0 deletions modules/nf-core/ensemblvep/vep/ensemblvep-vep.diff
View file
Open in desktop

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

4 changes: 2 additions & 2 deletions modules/nf-core/ensemblvep/vep/main.nf
View file
Open in desktop

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

2 changes: 1 addition & 1 deletion nextflow.config
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -295,7 +295,7 @@ manifest {
description = """A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data"""
mainScript = 'main.nf'
nextflowVersion = '!>=24.04.0'
version = '1.9.0dev'
version = '1.8.1dev'
doi = ''
}

Expand Down
Loading