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Release PR v1.8.0#199

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nvnieuwk merged 57 commits intomainnf-cmgg/germline:mainfrom devnf-cmgg/germline:devCopy head branch name to clipboardSep 24, 2024

+12,876-2,980

Commits

Commits on Aug 23, 2024

• bump to 1.8.0dev

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Commits on Aug 28, 2024

• first batch of updates

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• second batch of updates

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• third batch of updates

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• fourth batch of updates

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Commits on Aug 29, 2024

• update configs

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• update changelog

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• update config includes

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• use nf-core dev for linting

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• bump minimal nextflow version

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• remove whitespace

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• Merge pull request #188 from nf-cmgg/ben-made-me-do-this

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Commits on Sep 3, 2024

• first steps

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  42ff0b1

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• resolve all non module linting issues

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Commits on Sep 4, 2024

• update all modules

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• pre-commit

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• prettier

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• fix validate tests

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Commits on Sep 5, 2024

• fix somalier tests

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• fix somalier tests

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  e33f082

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• fix rtgtools testz

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• fix rtgtools testz

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• fix more failing tests

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• fix all the things?

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• update changelog

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• fix final test?

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• make nf-core happy again

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• implement watchpath

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Commits on Sep 6, 2024

• fix some more issues found with the new import

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Commits on Sep 10, 2024

• Fix haplotyper resource usage (#192)

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• reintroduce nf-core lint support + update all modules (#190)

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• nf-core modules update (#193)

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• set igenomes ignore to true by default

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Commits on Sep 20, 2024

• fix tests

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• Merge branch 'watchpath-support' of https://github.com/nf-cmgg/germline into watchpath-support

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• fix some small issues

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• fix unresolved merge conflicts

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• make pre-commit happy

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  bb46fe2

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• [no-cancel] fix nf-core lint

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• [no-cancel] fix nf-core lint

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Commits on Sep 23, 2024

• fix prepare tests

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• undo no cancel

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• fix snapshots

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• make genomes ignore true

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• fix an issue with the validation workflow

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• Merge pull request #196 from nf-cmgg/watchpath-support

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• also filter out low coverage regions

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• update changelog

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• fix snap

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• Merge pull request #197 from nf-cmgg/callable-regions

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• rename master branch to main

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• Merge branch 'dev' into rename-master-to-main

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• fix nf-core lint

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• Merge branch 'rename-master-to-main' of https://github.com/nf-cmgg/germline into rename-master-to-main

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• Merge pull request #198 from nf-cmgg/rename-master-to-main

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• Merge branch 'dev' of https://github.com/nf-cmgg/germline into dev

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• update version

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