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nvnieuwk committed Sep 24, 2024
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12 changes: 8 additions & 4 deletions CHANGELOG.md
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The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## v1.8.0 - Optimistic Oostkamp - [September 23 2024]
## v1.9.0dev

## New features
### Changes

## v1.8.0 - Optimistic Oostkamp - [September 24 2024]

### New features

1. Added `watchpath` functionality to the pipeline. Add the `watch:` prefix to a file basename in the samplesheet and the pipeline will automatically wait for the file to be created in the `--watchdir` directory (the lookup happens recursively)

## Changes
### Changes

1. Bumped the minimal support nextflow version to `24.04.0`
2. Bumped all modules to the newest versions
3. The pipeline now also outputs `csi` indices
4. Rename the `master` branch to `main`
5. Low coverage regions (regions with less than 5 reads) are no longer considered for variant calling

## Refactors
### Refactors

1. Updated the pipeline to the new linting guidelines
2. Removed `check_max` in favor of `resourceLimits`
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2 changes: 1 addition & 1 deletion nextflow.config
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description = """A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data"""
mainScript = 'main.nf'
nextflowVersion = '!>=24.04.0'
version = '1.8.0'
version = '1.9.0dev'
doi = ''
}

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