Deployed aaf2d7a to dev with MkDocs 1.6.0 and mike 2.1.3

nf-cmgg · Aug 29, 2024 · 939faa5 · 939faa5
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commit 939faa5
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Showing 11 changed files with 24 additions and 82 deletions.
diff --git a/dev/404.html b/dev/404.html
@@ -12,7 +12,7 @@
 
 
       <link rel="icon" href="/germline/dev/assets/images/favicon.png">
-      <meta name="generator" content="mkdocs-1.6.0, mkdocs-material-9.5.32">
+      <meta name="generator" content="mkdocs-1.6.0, mkdocs-material-9.5.33">
 
 
 
@@ -418,7 +418,7 @@ <h1>404 - Not found</h1>
     <script id="__config" type="application/json">{"base": "/germline/dev", "features": ["content.code.annotate", "content.code.copy", "navigation.instant", "navigation.top", "navigation.tracking", "navigation.sections", "navigation.footer", "search.share", "toc.follow"], "search": "/germline/dev/assets/javascripts/workers/search.b8dbb3d2.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version": "Select version"}, "version": {"provider": "mike"}}</script>
 
 
-      <script src="/germline/dev/assets/javascripts/bundle.471ce7a9.min.js"></script>
+      <script src="/germline/dev/assets/javascripts/bundle.af256bd8.min.js"></script>
 
 
   </body>

diff --git a/dev/CITATIONS/index.html b/dev/CITATIONS/index.html
@@ -16,7 +16,7 @@
 
 
       <link rel="icon" href="../assets/images/favicon.png">
-      <meta name="generator" content="mkdocs-1.6.0, mkdocs-material-9.5.32">
+      <meta name="generator" content="mkdocs-1.6.0, mkdocs-material-9.5.33">
 
 
 
@@ -719,7 +719,7 @@ <h2 id="pipeline-tools-in-alphabetical-order">Pipeline tools (in alphabetical or
     <script id="__config" type="application/json">{"base": "..", "features": ["content.code.annotate", "content.code.copy", "navigation.instant", "navigation.top", "navigation.tracking", "navigation.sections", "navigation.footer", "search.share", "toc.follow"], "search": "../assets/javascripts/workers/search.b8dbb3d2.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version": "Select version"}, "version": {"provider": "mike"}}</script>
 
 
-      <script src="../assets/javascripts/bundle.471ce7a9.min.js"></script>
+      <script src="../assets/javascripts/bundle.af256bd8.min.js"></script>
 
 
   </body>

diff --git a/...assets/javascripts/bundle.471ce7a9.min.js → ...assets/javascripts/bundle.af256bd8.min.js b/...assets/javascripts/bundle.471ce7a9.min.js → ...assets/javascripts/bundle.af256bd8.min.js
diff --git a/...ts/javascripts/bundle.471ce7a9.min.js.map → ...ts/javascripts/bundle.af256bd8.min.js.map b/...ts/javascripts/bundle.471ce7a9.min.js.map → ...ts/javascripts/bundle.af256bd8.min.js.map
diff --git a/dev/index.html b/dev/index.html
@@ -16,7 +16,7 @@
 
 
       <link rel="icon" href="assets/images/favicon.png">
-      <meta name="generator" content="mkdocs-1.6.0, mkdocs-material-9.5.32">
+      <meta name="generator" content="mkdocs-1.6.0, mkdocs-material-9.5.33">
 
 
 
@@ -662,7 +662,7 @@ <h2 id="citations">Citations</h2>
     <script id="__config" type="application/json">{"base": ".", "features": ["content.code.annotate", "content.code.copy", "navigation.instant", "navigation.top", "navigation.tracking", "navigation.sections", "navigation.footer", "search.share", "toc.follow"], "search": "assets/javascripts/workers/search.b8dbb3d2.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version": "Select version"}, "version": {"provider": "mike"}}</script>
 
 
-      <script src="assets/javascripts/bundle.471ce7a9.min.js"></script>
+      <script src="assets/javascripts/bundle.af256bd8.min.js"></script>
 
 
   </body>

diff --git a/dev/output/index.html b/dev/output/index.html
@@ -18,7 +18,7 @@
 
 
       <link rel="icon" href="../assets/images/favicon.png">
-      <meta name="generator" content="mkdocs-1.6.0, mkdocs-material-9.5.32">
+      <meta name="generator" content="mkdocs-1.6.0, mkdocs-material-9.5.33">
 
 
 
@@ -585,7 +585,7 @@ <h2 id="pipeline-overview">Pipeline overview</h2>
     <script id="__config" type="application/json">{"base": "..", "features": ["content.code.annotate", "content.code.copy", "navigation.instant", "navigation.top", "navigation.tracking", "navigation.sections", "navigation.footer", "search.share", "toc.follow"], "search": "../assets/javascripts/workers/search.b8dbb3d2.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version": "Select version"}, "version": {"provider": "mike"}}</script>
 
 
-      <script src="../assets/javascripts/bundle.471ce7a9.min.js"></script>
+      <script src="../assets/javascripts/bundle.af256bd8.min.js"></script>
 
 
   </body>

diff --git a/dev/parameters/index.html b/dev/parameters/index.html
@@ -18,7 +18,7 @@
 
 
       <link rel="icon" href="../assets/images/favicon.png">
-      <meta name="generator" content="mkdocs-1.6.0, mkdocs-material-9.5.32">
+      <meta name="generator" content="mkdocs-1.6.0, mkdocs-material-9.5.33">
 
 
 
@@ -401,15 +401,6 @@
     </span>
   </a>
 
-</li>
-
-        <li class="md-nav__item">
-  <a href="#max-job-request-options" class="md-nav__link">
-    <span class="md-ellipsis">
-      Max job request options
-    </span>
-  </a>
-
 </li>
 
         <li class="md-nav__item">
@@ -518,15 +509,6 @@
     </span>
   </a>
 
-</li>
-
-        <li class="md-nav__item">
-  <a href="#max-job-request-options" class="md-nav__link">
-    <span class="md-ellipsis">
-      Max job request options
-    </span>
-  </a>
-
 </li>
 
         <li class="md-nav__item">
@@ -1039,46 +1021,6 @@ <h2 id="institutional-config-options">Institutional config options</h2>
 </tr>
 </tbody>
 </table>
-<h2 id="max-job-request-options">Max job request options</h2>
-<p>Set the top limit for requested resources for any single job.</p>
-<table>
-<thead>
-<tr>
-<th>Parameter</th>
-<th>Description</th>
-<th>Type</th>
-<th>Default</th>
-<th>Required</th>
-<th>Hidden</th>
-</tr>
-</thead>
-<tbody>
-<tr>
-<td><code>max_cpus</code></td>
-<td>Maximum number of CPUs that can be requested for any single job. <details><summary>Help</summary><small>Use to set an upper-limit for the CPU requirement for each process. Should be an integer e.g. <code>--max_cpus 1</code></small></details></td>
-<td><code>integer</code></td>
-<td>16</td>
-<td></td>
-<td>True</td>
-</tr>
-<tr>
-<td><code>max_memory</code></td>
-<td>Maximum amount of memory that can be requested for any single job. <details><summary>Help</summary><small>Use to set an upper-limit for the memory requirement for each process. Should be a string in the format integer-unit e.g. <code>--max_memory '8.GB'</code></small></details></td>
-<td><code>string</code></td>
-<td>128.GB</td>
-<td></td>
-<td>True</td>
-</tr>
-<tr>
-<td><code>max_time</code></td>
-<td>Maximum amount of time that can be requested for any single job. <details><summary>Help</summary><small>Use to set an upper-limit for the time requirement for each process. Should be a string in the format integer-unit e.g. <code>--max_time '2.h'</code></small></details></td>
-<td><code>string</code></td>
-<td>240.h</td>
-<td></td>
-<td>True</td>
-</tr>
-</tbody>
-</table>
 <h2 id="generic-options">Generic options</h2>
 <p>Less common options for the pipeline, typically set in a config file.</p>
 <table>
@@ -1574,7 +1516,7 @@ <h2 id="annotation-parameters">Annotation parameters</h2>
     <script id="__config" type="application/json">{"base": "..", "features": ["content.code.annotate", "content.code.copy", "navigation.instant", "navigation.top", "navigation.tracking", "navigation.sections", "navigation.footer", "search.share", "toc.follow"], "search": "../assets/javascripts/workers/search.b8dbb3d2.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version": "Select version"}, "version": {"provider": "mike"}}</script>
 
 
-      <script src="../assets/javascripts/bundle.471ce7a9.min.js"></script>
+      <script src="../assets/javascripts/bundle.af256bd8.min.js"></script>
 
 
   </body>

diff --git a/dev/search/search_index.json b/dev/search/search_index.json
diff --git a/dev/sitemap.xml b/dev/sitemap.xml
@@ -2,27 +2,27 @@
 <urlset xmlns="http://www.sitemaps.org/schemas/sitemap/0.9">
     <url>
          <loc>https://nf-cmgg.github.io/germline/dev/</loc>
-         <lastmod>2024-08-23</lastmod>
+         <lastmod>2024-08-29</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>https://nf-cmgg.github.io/germline/dev/CITATIONS/</loc>
-         <lastmod>2024-08-23</lastmod>
+         <lastmod>2024-08-29</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>https://nf-cmgg.github.io/germline/dev/output/</loc>
-         <lastmod>2024-08-23</lastmod>
+         <lastmod>2024-08-29</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>https://nf-cmgg.github.io/germline/dev/parameters/</loc>
-         <lastmod>2024-08-23</lastmod>
+         <lastmod>2024-08-29</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>https://nf-cmgg.github.io/germline/dev/usage/</loc>
-         <lastmod>2024-08-23</lastmod>
+         <lastmod>2024-08-29</lastmod>
          <changefreq>daily</changefreq>
     </url>
 </urlset>
diff --git a/dev/sitemap.xml.gz b/dev/sitemap.xml.gz
diff --git a/dev/usage/index.html b/dev/usage/index.html
@@ -18,7 +18,7 @@
 
 
       <link rel="icon" href="../assets/images/favicon.png">
-      <meta name="generator" content="mkdocs-1.6.0, mkdocs-material-9.5.32">
+      <meta name="generator" content="mkdocs-1.6.0, mkdocs-material-9.5.33">
 
 
 
@@ -771,7 +771,7 @@ <h2 id="nextflow-memory-requirements">Nextflow memory requirements</h2>
     <script id="__config" type="application/json">{"base": "..", "features": ["content.code.annotate", "content.code.copy", "navigation.instant", "navigation.top", "navigation.tracking", "navigation.sections", "navigation.footer", "search.share", "toc.follow"], "search": "../assets/javascripts/workers/search.b8dbb3d2.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version": "Select version"}, "version": {"provider": "mike"}}</script>
 
 
-      <script src="../assets/javascripts/bundle.471ce7a9.min.js"></script>
+      <script src="../assets/javascripts/bundle.af256bd8.min.js"></script>
 
 
   </body>