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@nextstrain

Nextstrain

Real-time tracking of pathogen evolution

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  1. ncov ncov Public

    Nextstrain build for novel coronavirus SARS-CoV-2

    Python 1.4k 403

  2. augur augur Public

    Pipeline components for real-time phylodynamic analysis

    Python 270 128

  3. auspice auspice Public

    Web app for visualizing pathogen evolution

    JavaScript 296 162

Repositories

Showing 10 of 94 repositories
  • hmpv Public

    Human metapneumovirus pathogen build

    nextstrain/hmpv’s past year of commit activity
    Python 0 0 6 0 Updated Jan 8, 2025
  • nextstrain.org Public

    The Nextstrain website

    nextstrain/nextstrain.org’s past year of commit activity
    JavaScript 91 AGPL-3.0 48 69 (1 issue needs help) 12 Updated Jan 8, 2025
  • augur Public

    Pipeline components for real-time phylodynamic analysis

    nextstrain/augur’s past year of commit activity
    Python 270 AGPL-3.0 128 240 (1 issue needs help) 54 Updated Jan 8, 2025
  • avian-flu Public

    Nextstrain build for avian influenza viruses

    nextstrain/avian-flu’s past year of commit activity
    Python 22 9 11 8 Updated Jan 7, 2025
  • status Public

    Nextstrain status pages

    nextstrain/status’s past year of commit activity
    Go 1 MIT 0 2 0 Updated Jan 7, 2025
  • docker-base Public

    Docker image build for nextstrain/base

    nextstrain/docker-base’s past year of commit activity
    Shell 12 6 12 4 Updated Jan 7, 2025
  • conda-base Public

    Conda package build for nextstrain-base

    nextstrain/conda-base’s past year of commit activity
    Shell 1 1 8 2 Updated Jan 7, 2025
  • lassa Public

    Nextstrain build for Lassa virus

    nextstrain/lassa’s past year of commit activity
    Python 0 5 10 1 Updated Jan 7, 2025
  • mpox Public

    Nextstrain build for mpox virus

    nextstrain/mpox’s past year of commit activity
    Python 45 MIT 19 27 7 Updated Jan 6, 2025
  • auspice Public

    Web app for visualizing pathogen evolution

    nextstrain/auspice’s past year of commit activity
    JavaScript 296 AGPL-3.0 162 238 (4 issues need help) 34 Updated Jan 6, 2025
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