Skip to content

Commit

Permalink
upate docs for databases example
Browse files Browse the repository at this point in the history
  • Loading branch information
hyphaltip committed Aug 12, 2024
1 parent f5cac16 commit 13c7f6d
Showing 1 changed file with 10 additions and 10 deletions.
20 changes: 10 additions & 10 deletions docs/databases.rst
Original file line number Diff line number Diff line change
Expand Up @@ -32,16 +32,16 @@ This will download and format the databases, they can be displayed like so:
Funannotate Databases currently installed:
Database Type Version Date Num_Records Md5checksum
pfam hmmer3 32.0 2018-08 17929 de7496fad69c1040fd74db1cb5eef0fc
gene2product text 1.45 2019-07-31 30103 657bb30cf3247fcb74ca4f51a4ab7c18
interpro xml 76.0 2019-09-18 37113 328f66a791f9866783764f24a74a5aa3
dbCAN hmmer3 8.0 2019-08-08 607 51c724c1f9ac45687f08d0faa689ed58
busco_outgroups outgroups 1.0 2019-10-20 7 6795b1d4545850a4226829c7ae8ef058
merops diamond 12.0 2017-10-04 5009 a6dd76907896708f3ca5335f58560356
mibig diamond 1.4 2019-10-20 31023 118f2c11edde36c81bdea030a0228492
uniprot diamond 2019_09 2019-10-16 561176 9fc7871b8c4e3b755fe2086d77ed0645
go text 2019-10-07 2019-10-07 47375 3bc9ba43a98bf8fcd01db6e7e7813dd2
repeats diamond 1.0 2019-10-20 11950 4e8cafc3eea47ec7ba505bb1e3465d21
merops diamond 12.5 2023-01-19 5098 6cd3c3dd85650394ce4e3dacb591f2a5
uniprot diamond 2024_01 2024-01-24 570830 c7507ea16b3c4807971c663994cad329
dbCAN hmmer3 11.0 2022-08-09 699 fb112af319a5001fbf547eac29e7c3b5
pfam hmmer3 36.0 2023-07 20795 0725495ccf049a4f198fcc0a92f7f38c
repeats diamond 1.0 2022-03-13 11950 4e8cafc3eea47ec7ba505bb1e3465d21
go text 2024-01-17 2024-01-17 47729 7e6b9974184dda306e6e07631f1783af
mibig diamond 1.4 2022-03-13 31023 118f2c11edde36c81bdea030a0228492
interpro xml 98.0 2024-01-25 40768 502ea05009761b893dedb56d5ea89c48
busco_outgroups outgroups 1.0 2024-03-04 8 6795b1d4545850a4226829c7ae8ef058
gene2product text 1.92 2023-10-02 34459 32a4a80987720e0872377de3207dc0f5
To update a database type:
funannotate setup -i DBNAME -d $HOME/funannotate_db --force
Expand Down

0 comments on commit 13c7f6d

Please sign in to comment.