v0.4.2

What's Changed

• [FIX] show empty list when no ids by @jdkent in #689

Full Changelog: v0.4.1...v0.4.2

v0.4.1

What's Changed

• [REF] refactor marshmallow schema logic by @jdkent in #681
• [ENH] add ability to update study upon cloning by @jdkent in #682
• [ENH] project info by @jdkent in #683
• [FIX] remove info fields by @jdkent in #685
• [FIX] set info to false when searching for base studies by @jdkent in #686
• [ENH] add ids param on meta-analysis endpoint by @jdkent in #687
• [REF] record neurovault ingestion by @jdkent in #688

Some meta-analyses were not showing up on the frontend, #687 fixes the ability to display more meta-analyses for a particular project.
Full Changelog: v0.4.0...v0.4.1

v0.4.0

Quality of life improvements for defaults and including more information

What's Changed

• [FIX] hacky fix for FDRCorrector default by @jdkent in #663
• [FIX] textbox by @jdkent in #664
• [FIX] have a project specific chip by @jdkent in #671
• [FIX] add study info on extraction page by @jdkent in #672
• [FIX] do not prepend newline by @jdkent in #673
• add --n-cores to docker command by @jdkent in #674
• [ENH] Update nimare spec by @jdkent in #675
• [FIX] ingest more information than the basics when available by @jdkent in #676

Full Changelog: v0.3.1...v0.4.0

v0.3.1

What's Changed

• feat: addressed meta-analysis bugs and improvements by @nicoalee in #648
• [FIX] add the docker-command by @jdkent in #650

Full Changelog: v0.3.0...v0.3.1

v0.3.0

What's Changed

• fix bug to return boolean array by @jdkent in #628
• [FIX] allow test user and fix subset comparison by @jdkent in #629
• 563 support mkdachi2 workflow in frontend by @nicoalee in #630
• Fix/allow test user by @jdkent in #631
• feat: add unit tests and fix input to database studyset by @nicoalee in #634
• feat: fixed issues with incorrect specification for multi group estim… by @nicoalee in #636
• 621 misc feedback on search curate by @nicoalee in #641
• 622 misc extraction phase feedback by @nicoalee in #643
• [FIX] specification_condition update by @jdkent in #644

Full Changelog: v0.2.2...v0.3.0

v0.2.2 (November, 22, 2023)

What's Changed

• 594 refresh the landing page by @nicoalee in #603
• [FIX] ignore changelog by @jdkent in #605
• [REF] update connexion to 3.0.0 by @jdkent in #606
• 567 make studies swappable by @nicoalee in #608
• fix cors issue by @jdkent in #611
• feat: fixed stylistic issues, added deleteproject button, fixed cypre… by @nicoalee in #610
• flip subpeak determination by @jdkent in #615
• fix spec updates by @jdkent in #617
• do not cascade with removal of base_study by @jdkent in #620
• Ref/speed up ingestion by @jdkent in #616

Full Changelog: v0.2.1...v0.2.2

v0.2.1 (October, 5, 2023)

Release Notes

Minor release, incorporate major bug fixes and recommendations from OHBM meeting.

CHANGES

• [FIX] unique already creates an index, unique made a repetitive index (#600) @jdkent
• [ENH] add base_study attribute (#599) @jdkent
• [FIX] ignore string if doi/pmid/name string is empty (#598) @jdkent
• [ENH] add conditions and weights to specification (#597) @jdkent
• [ENH] add studyset-references endpoint (#596) @jdkent
• chore(deps): bump @cypress/request and cypress in /compose/neurosynth-frontend (#595) @dependabot
• 197 display user icon name (#591) @nicoalee
• [ENH] add username and neurostore studyset script (#590) @jdkent
• [FIX] nick feedback (#589) @jdkent
• [ENH] add usernames to compose (#588) @jdkent
• [MAINT] update openapi to main branch (#586) @jdkent
• [ENH] bulk upload (#585) @jdkent
• 565 update the advanced search input (#583) @nicoalee
• [ENH] add username as resource attribute (#584) @jdkent
• 561 switch api from studies to abstract studies (#582) @nicoalee
• [FIX] id not showing up for info=true (#581) @jdkent
• [ENH] using an iterator over a list comprehension should be faster (#578) @jdkent
• [FIX] add data_type to base_study (#577) @jdkent
• [FIX] info query param behavior (#576) @jdkent
• [ENH] make it quicker to filter studies by whether they have images/points. (#574) @jdkent
• chore(deps): bump tough-cookie and @cypress/request in /compose/neurosynth-frontend (#569) @dependabot

0.2 post-ohbm release

What's Changed

• feat: updated node and react scripts by @nicoalee in #352
• 307 refactor loading and http requests using react query by @nicoalee in #362
• feat: updated tests and removed old types by @nicoalee in #365
• feat: add create meta-analysis button by @nicoalee in #366
• feat: added redirect to created meta-analysis and unit tests by @nicoalee in #367
• 361 improve meta analysis summary page by @nicoalee in #368
• [TEST] skip tests if external service is not working by @jdkent in #353
• [ENH] add studyset link by @jdkent in #364
• 363 add ability to delete studies by @nicoalee in #373
• [FIX] data type both by @jdkent in #375
• [FIX] add httpx until schemathesis is fixed by @jdkent in #378
• 371 enhance study search view to add studysets that a study is part of with better study addremove functionality by @nicoalee in #377
• 356 add search for studysets by @nicoalee in #379
• [ENH] change workflow to incorporate data for frontend tests by @jdkent in #372
• [FIX] flask sqlalchemy by @jdkent in #385
• [MAINT] use tilde versioning on dependencies by @jdkent in #387
• [REF] neurosynth to compose by @jdkent in #386
• [ENH] add meta analysis provenance by @jdkent in #389
• [ENH] add project table by @jdkent in #393
• feat: added plausible by @nicoalee in #392
• [FIX] allow project to be null by @jdkent in #395
• [FIX] add annotations when analysis is added, not just study by @jdkent in #397
• Add/improve documentation by @jdkent in #333
• [ENH] Add upload process (celery) by @jdkent in #332
• [FIX] add new analysis annotation by @jdkent in #402
• [FIX] celery tests by @jdkent in #405
• [MAINT] delete compose packages by @jdkent in #409
• [FIX] add api in context of current app by @jdkent in #410
• [FIX] increase page size limit by @jdkent in #414
• [FIX] only debug when specified by @jdkent in #413
• [FIX] handled numeric input parse by @jdkent in #416
• [REF] list user args by @jdkent in #415
• [FIX] compose tests by @jdkent in #418
• [FIX] study unique query by @jdkent in #417
• [FIX] neurosynth ingestion by @jdkent in #419
• change to refactored openapi by @jdkent in #420
• [FIX] annotations not updating properly (again) by @jdkent in #421
• [FIX] POST meta-analysis with project by @jdkent in #424
• [ENH] upload neurostore table from results by @jdkent in #422
• [FIX] update openapi spec by @jdkent in #427
• [ENH] project public private by @jdkent in #428
• [FIX] create neurostore study when project is created by @jdkent in #439
• [FIX] compose bot by @jdkent in #440
• [FIX] junit tests by @jdkent in #441
• 381 restructure user experience with meta first approach by @nicoalee in #399
• [FIX] upload key name by @jdkent in #442
• chore(deps): bump @sideway/formula from 3.0.0 to 3.0.1 in /compose/neurosynth-frontend by @dependabot in #404
• chore(deps): bump json5 from 1.0.1 to 1.0.2 in /compose/neurosynth-frontend by @dependabot in #398
• [FIX] celery context by @jdkent in #445
• feat: prevent scroll from changing number input, better support for e… by @nicoalee in #444
• chore(deps): bump webpack from 5.74.0 to 5.83.1 in /compose/neurosynth-frontend by @dependabot in #443
• [FIX] schemas by @jdkent in #446
• [FIX] show diagnostic table at endpoint by @jdkent in #447
• chore(deps-dev): bump jsonwebtoken from 8.5.1 to 9.0.0 in /compose/neurosynth-frontend by @dependabot in #396
• chore(deps): bump decode-uri-component from 0.2.0 to 0.2.2 in /compose/neurosynth-frontend by @dependabot in #394
• chore(deps): bump loader-utils from 2.0.2 to 2.0.4 in /compose/neurosynth-frontend by @dependabot in #391
• feat: set the same order for all analyses - alphabetically by analysi… by @nicoalee in #448
• feat: add default studyset name and description by @nicoalee in #454
• feat: added more info for selecting a study by @nicoalee in #456
• feat: updated save button sitting below annotations by @nicoalee in #460
• 434 coordinate editing ability to add more than one row at a time by @nicoalee in #463
• feat: removed autofill name for meta analysis by @nicoalee in #464
• feat: made links clickable for study display by @nicoalee in #466
• [FIX] swagger ui fix with prance by @jdkent in #467
• [ENH] results endpoint improvements by @jdkent in #462
• [FIX] null results by @jdkent in #468
• [FIX] add new fields to point by @jdkent in #469
• [FIX] update openapi spec by @jdkent in #470
• [FIX] make value a float by @jdkent in #471
• 436 proposal for coordinate table organization by @nicoalee in #472
• [ENH] make the studies endpoint query faster by @jdkent in #474
• [ENH] add order to Points object by @jdkent in #475
• [FIX] add order and status by @jdkent in #477
• [FIX] try to catch more errors on analysis creation by @jdkent in #478
• [FIX] allow bot to add analysis to study owned by user by @jdkent in #479
• [FIX] neurostore analysis upload by @jdkent in #481
• [FIX] make analysis upload a task by @jdkent in #482
• [ENH] use outerjoins to display studies by @jdkent in #483
• 455 upload workflow post meta analysis run by @nicoalee in #491
• chore(deps): bump fast-xml-parser from 4.0.12 to 4.2.4 in /compose/neurosynth-frontend by @dependabot in #484
• feat: added semantic scholar to provide full text by @nicoalee in #492
• 488 make sample size a default metadata key when the user owns the study by @nicoalee in #493
• [ENH] abstract study by @jdkent in #486
• [ENH] switch missing names to base_studies by @jdkent in #495
• [ENH] Add sqltap by @jdkent in #496
• [FIX] fix the study search endpoint by @jdkent in #497
• [FIX] search capabilities by @jdkent in #498
• feat: finished user improvements from feedback by @nicoalee in #499
• feat: updated links for navbar docs and neurovault by @nicoalee in #501
• bugfix: save tags by @nicoalee in #504
• bugfix: handled non prisma case for exclusion selector popup by @nicoalee in https://github.com/neurostuff/neurostore/...

v0.1: First official release

What's Changed

This is the first versioned release of neurostore. The main items implemented are:

• backend for storing coordinate/image based studies (neurostore.org)
• backend for creating meta-analyses (compose.neurosynth.org)
• frontend for interfacing with both backends
  This release represents a functional website for using previously ingested studies to create studysets, specify meta-analyses and run those meta-analyses on a google collab notebook.

• [REF] Set up docker-compose, and other boilerplate by @adelavega in #3
• [REF] Move to Python 3.8, add tests by @adelavega in #8
• [REF] Drop Flask-Restful by @adelavega in #9
• [ENH] Remove initialization of database by @jdkent in #16
• [FIX] DockerTestConfig by @jdkent in #15
• [ENH] Add OpenAPI Specification by @jdkent in #19
• [ENH, FIX] Deploy behind nginx-proxy by @tyarkoni in #24
• [ENH] post/get datasets by @jdkent in #29
• [REF] use id's only instead of IRIs by @jdkent in #26
• [STY] run black and check style with flake8 by @jdkent in #30
• [ENH] add login by @jdkent in #33
• [ENH] Add cloning functionality by @jdkent in #36
• [FIX] neurovault ingestion by @jdkent in #39
• [ENH] Add Condition POST by @jdkent in #40
• [FIX] minor fixes by @jdkent in #57
• [FIX] reference original parent when cloning by @jdkent in #58
• [FIX] conform test cases to openapi standard by @jdkent in #61
• [REF] use Auth0 for authentication by @jdkent in #67
• [ENH] pagination by @jdkent in #72
• [FIX] urls in example_config by @jdkent in #78
• [FIX] cloning studies with images by @jdkent in #80
• [REF] add query parameters and filters to display only original studies by @jdkent in #82
• [ENH] New neurosynth format by @jdkent in #86
• [REF] merge the frontend with the backend by @nicoalee in #88
• [FIX] Do no include id in PUT requests by @jdkent in #90
• [REF] database changes by @jdkent in #93
• [ENH] Ingestion by @jdkent in #95
• [TST] add tests by @nicoalee in #97
• [FIX] public/private distinction by @jdkent in #96
• [MAINT] update spec by @jdkent in #103
• [MAINT] upgrade react materials to MUI V5 by @nicoalee in #105
• [ENH] add pagination by @nicoalee in #106
• [ENH] run frontend by @jdkent in #108
• [ENH] basic search filtering by @nicoalee in #109
• [ENH] edit enhancements by @nicoalee in #114
• [MNT] update staging by @jdkent in #115
• [FIX] add try_file in nginx by @jdkent in #118
• [TST] add frontend tests by @jdkent in #116
• [MAINT] updated gitignore with postgres py migration files and added e… by @nicoalee in #120
• [DOC] added build steps for dev and staging and updated readme by @nicoalee in #123
• [FIX] code review improvements by @nicoalee in #125
• [ENH] datasets & annotations by @jdkent in #126
• [REF] docker compose init procedure by @jdkent in #135
• [FIX] images add date by @jdkent in #137
• [REF] restructure code by @jdkent in #139
• [ENH] add analyses to study view by @nicoalee in #143
• [ENH] cloning a study will redirect to that study, log out bug fixed by @nicoalee in #150
• [FIX] map port 80 again by @jdkent in #153
• [ENH] study analyses editing by @nicoalee in #156
• [ENH] add delete operation to all endpoints by @jdkent in #165
• [ENH] implement datasets by @nicoalee in #174
• [FIX] add health command for postgres by @jdkent in #177
• [MAINT] update spec by @jdkent in #179
• [ENH] add export option to annotations by @jdkent in #181
• [MAINT] annotations/tests by @jdkent in #188
• [MAINT] change openapi branch to main by @jdkent in #189
• [MAINT] installation by @jdkent in #190
• [ENH] study year by @jdkent in #192
• [FIX] userview by @jdkent in #199
• [MAINT] add ipython to command flask shell by @jdkent in #200
• [FIX] public private by @jdkent in #201
• [ENH] Coordinate/Image search by @jdkent in #202
• [FIX] update annotations when adding study to dataset by @jdkent in #208
• [ENH] annotation key by @jdkent in #212
• [FEAT] Add Annotations Page by @jdkent in #193
• [ENH] add neurosynth2 by @jdkent in #218
• [FIX] maint by @jdkent in #222
• [FIX] spec conformance by @jdkent in #223
• [FIX] initialize annotation with empty notes by @jdkent in #224
• [ENH] added appzi feedback widget by @nicoalee in #229
• [REF] moved neurosynth-frontend to synth folder by @nicoalee in #230
• [FIX] removed notes property from payload by @nicoalee in #233
• [ENH] 234 add owner column to annotations by @nicoalee in #240
• [TST] point test by @jdkent in #246
• [ENH] make nested queries faster by @jdkent in #239
• [ENH] convert datasets to studysets by @jdkent in #242
• [FIX] missing change from dataset to studyset by @jdkent in #250
• [MAINT] update openapi spec by @jdkent in #251
• [Fix] entity by @jdkent in #256
• [FIX] change kwargs to metadata in schemas by @jdkent in #257
• [ENH] study editor: add/remove/update conditions by @jdkent in #244
• [REF] 258 integrate sdk into frontend and cicd pipeline by @nicoalee in #260
• [ENH] update spec by @jdkent in #272
• [ENH] ingest neurostore data by @jdkent in #273
• [FIX] neurosynth endpoint by @jdkent in #274
• [TST] schemathesis robustness by @jdkent in #276
• [FIX] add missing fields specification schema by @jdkent in #278
• [DOC] include documentation for the neurosynth spec by @jdkent in #282
• [ENH] add frontend config by @jdkent in #249
• [REF] Split nimads by @jdkent in #287
• [ENH] 113 edit enhancements involving addremoveupdate points by @nicoalee in #290
• [FIX] Remove unused function by @jdkent in #289
• [REF] prepare compose.neurosynth.org by @jdkent in #294
• [ENH] 292 rework landing page and improve performance by @nicoalee in #297
• [FIX] fix: resolved bug with ids set to same id by @nicoalee in https://github.com/neurostuff/neurostore/pull...