If you use KGExplorer, please cite:
Kitty B. Murphy, Robert Gordon-Smith, Jai Chapman, Momoko Otani, Brian M. Schilder, Nathan G. Skene (2023) Identification of cell type-specific gene targets underlying thousands of rare diseases and subtraits. medRxiv, https://doi.org/10.1101/2023.02.13.23285820
if(!require("BiocManager")) install.packages("BiocManager")
BiocManager::install("neurogenomics/KGExplorer")
library(KGExplorer)utils::sessionInfo()## R version 4.4.2 (2024-10-31)
## Platform: aarch64-apple-darwin20
## Running under: macOS Sequoia 15.2
##
## Matrix products: default
## BLAS: /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libRblas.0.dylib
## LAPACK: /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libRlapack.dylib; LAPACK version 3.12.0
##
## locale:
## [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
##
## time zone: Europe/London
## tzcode source: internal
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## loaded via a namespace (and not attached):
## [1] gtable_0.3.6 jsonlite_1.8.9 renv_1.0.11
## [4] dplyr_1.1.4 compiler_4.4.2 BiocManager_1.30.25
## [7] tidyselect_1.2.1 rvcheck_0.2.1 scales_1.3.0
## [10] yaml_2.3.10 fastmap_1.2.0 here_1.0.1
## [13] ggplot2_3.5.1 R6_2.5.1 generics_0.1.3
## [16] knitr_1.49 yulab.utils_0.1.8 tibble_3.2.1
## [19] desc_1.4.3 dlstats_0.1.7 rprojroot_2.0.4
## [22] munsell_0.5.1 pillar_1.9.0 RColorBrewer_1.1-3
## [25] rlang_1.1.4 utf8_1.2.4 badger_0.2.4
## [28] xfun_0.49 fs_1.6.5 cli_3.6.3
## [31] magrittr_2.0.3 rworkflows_1.0.3 digest_0.6.37
## [34] grid_4.4.2 rstudioapi_0.17.1 lifecycle_1.0.4
## [37] vctrs_0.6.5 evaluate_1.0.1 glue_1.8.0
## [40] data.table_1.16.2 fansi_1.0.6 colorspace_2.1-1
## [43] rmarkdown_2.29 tools_4.4.2 pkgconfig_2.0.3
## [46] htmltools_0.5.8.1