Fetch Autominerva imaging assets from a remote URL

data/fetch_autominerva_mappings.sh

@@ -0,0 +1 @@
+curl https://d3p249wtgzkn5u.cloudfront.net/final-output/htan-imaging-assets-latest.json

data/processSynapseJSON.log

@@ -2,9 +2,9 @@ ncc: Version 0.28.6
 ncc: Compiling file index.js
 ncc: Using [email protected] (local user-provided)
    40kB  sourcemap-register.js
-10961kB  index.js
- 1425kB  index.js.map
-11001kB  [9288ms] - ncc 0.28.6
+10201kB  index.js
+ 1427kB  index.js.map
+10241kB  [26259ms] - ncc 0.28.6
 Missing ParentBiospecimenID:  {
   Component: 'ScRNA-seqLevel3',
   Filename: 'single_cell_RNAseq_level_3_ped_glioma/HTAN_pHGG_161_New_Reg1_snRNA/barcodes.tsv.gz',

lib/helpers.ts

@@ -44,7 +44,7 @@ export async function fetchData(): Promise<LoadDataResult> {
     const processedSynURL =
         process.env.NODE_ENV === 'development'
             ? '/processed_syn_data.json'
-            : `${getCloudBaseUrl()}/processed_syn_data_20241211_2209.json`;
+            : `${getCloudBaseUrl()}/processed_syn_data_20241226_1531.json`;
     return fetchSynData(processedSynURL);
 }
 

package.json

@@ -10,7 +10,8 @@
   },
   "scripts": {
     "dev": "yarn run next dev",
-    "updateData": "yarn run findAndReplace && yarn run processSynapseJSON && yarn run gzip",
+    "updateMappings": "bash data/fetch_autominerva_mappings.sh > data/htan-imaging-assets.json",
+    "updateData": "yarn run findAndReplace && yarn updateMappings && yarn run processSynapseJSON && yarn run gzip",
     "gzip": "yarn run gzipData && yarn run gzipMetadata",
     "gzipData": "gzip < public/syn_data.json > public/syn_data.json.gz && gzip < public/processed_syn_data.json > public/processed_syn_data.json.gz",
     "gzipMetadata": "rm -rf data/metadata_gzip/ && cp -r data/metadata data/metadata_gzip && find data/metadata_gzip -type f -exec gzip {} \\; -exec mv {}.gz {} \\;",