Update test data for version 4.0.2

ncbi · Oct 26, 2024 · 8c9cf97 · 8c9cf97
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/test_both.expected b/test_both.expected
@@ -1,4 +1,4 @@
-Protein id	Contig id	Start	Stop	Strand	Element symbol	Element name	Scope	Type	Subtype	Class	Subclass	Method	Element length	Reference sequence length	% Coverage of reference	% Identity to reference	Alignment length	Closest reference accession	Closest reference name	HMM accession	HMM description	Hierarchy node
+Protein id	Contig id	Start	Stop	Strand	Element symbol	Element name	Scope	Type	Subtype	Class	Subclass	Method	Target length	Reference sequence length	% Coverage of reference	% Identity to reference	Alignment length	Closest reference accession	Closest reference name	HMM accession	HMM description	Hierarchy node
 NA	contig01	1	984	+	blaTEMp_G162T	Escherichia amoxicillin-clavulanic acid/piperacillin-tazobactam/ticarcillin-clavulanic acid resistant blaTEM	core	AMR	POINT	BETA-LACTAM	AMOXICILLIN-CLAVULANIC_ACID/PIPERACILLIN-TAZOBACTAM/TICARCILLIN-CLAVULANIC_ACID	POINTN	984	1176	83.67	99.80	984	NZ_CP095603.1:148777-149952	blaTEM promoter region	NA	NA	NA
 blaTEM-156	contig01	101	961	+	blaTEM-156	class A beta-lactamase TEM-156	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	ALLELEP	286	286	100.00	100.00	286	WP_061158039.1	class A beta-lactamase TEM-156	NF000531.2	TEM family class A beta-lactamase	blaTEM-156
 blaPDC-114_blast	contig02	1	1191	+	blaPDC	PDC family class C beta-lactamase	core	AMR	AMR	BETA-LACTAM	CEPHALOSPORIN	BLASTP	397	397	100.00	99.75	397	WP_061189306.1	class C beta-lactamase PDC-114	NF000422.6	PDC family class C beta-lactamase	blaPDC

diff --git a/test_dna.expected b/test_dna.expected
@@ -1,4 +1,4 @@
-Protein id	Contig id	Start	Stop	Strand	Element symbol	Element name	Scope	Type	Subtype	Class	Subclass	Method	Element length	Reference sequence length	% Coverage of reference	% Identity to reference	Alignment length	Closest reference accession	Closest reference name	HMM accession	HMM description	Hierarchy node
+Protein id	Contig id	Start	Stop	Strand	Element symbol	Element name	Scope	Type	Subtype	Class	Subclass	Method	Target length	Reference sequence length	% Coverage of reference	% Identity to reference	Alignment length	Closest reference accession	Closest reference name	HMM accession	HMM description	Hierarchy node
 NA	contig01	1	984	+	blaTEMp_G162T	Escherichia amoxicillin-clavulanic acid/piperacillin-tazobactam/ticarcillin-clavulanic acid resistant blaTEM	core	AMR	POINT	BETA-LACTAM	AMOXICILLIN-CLAVULANIC_ACID/PIPERACILLIN-TAZOBACTAM/TICARCILLIN-CLAVULANIC_ACID	POINTN	984	1176	83.67	99.80	984	NZ_CP095603.1:148777-149952	blaTEM promoter region	NA	NA	NA
 NA	contig01	101	958	+	blaTEM-156	class A beta-lactamase TEM-156	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	ALLELEX	286	286	100.00	100.00	286	WP_061158039.1	class A beta-lactamase TEM-156	NA	NA	blaTEM-156
 NA	contig02	1	1191	+	blaPDC	PDC family class C beta-lactamase	core	AMR	AMR	BETA-LACTAM	CEPHALOSPORIN	BLASTX	397	397	100.00	99.75	397	WP_061189306.1	class C beta-lactamase PDC-114	NA	NA	blaPDC

diff --git a/test_prot.expected b/test_prot.expected
@@ -1,4 +1,4 @@
-Protein id	Contig id	Start	Stop	Strand	Element symbol	Element name	Scope	Type	Subtype	Class	Subclass	Method	Element length	Reference sequence length	% Coverage of reference	% Identity to reference	Alignment length	Closest reference accession	Closest reference name	HMM accession	HMM description	Hierarchy node
+Protein id	Contig id	Start	Stop	Strand	Element symbol	Element name	Scope	Type	Subtype	Class	Subclass	Method	Target length	Reference sequence length	% Coverage of reference	% Identity to reference	Alignment length	Closest reference accession	Closest reference name	HMM accession	HMM description	Hierarchy node
 blaTEM-156	contig01	101	961	+	blaTEM-156	class A beta-lactamase TEM-156	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	ALLELEP	286	286	100.00	100.00	286	WP_061158039.1	class A beta-lactamase TEM-156	NF000531.2	TEM family class A beta-lactamase	blaTEM-156
 blaPDC-114_blast	contig02	1	1191	+	blaPDC	PDC family class C beta-lactamase	core	AMR	AMR	BETA-LACTAM	CEPHALOSPORIN	BLASTP	397	397	100.00	99.75	397	WP_061189306.1	class C beta-lactamase PDC-114	NF000422.6	PDC family class C beta-lactamase	blaPDC
 blaOXA-436_partial	contig03	101	802	+	blaOXA	OXA-48 family class D beta-lactamase	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	PARTIALP	233	265	87.92	100.00	233	WP_058842180.1	OXA-48 family carbapenem-hydrolyzing class D beta-lactamase OXA-436	NF012161.0	class D beta-lactamase	blaOXA-48_fam