Fix action test with unset version variable? #483
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| name: C++ CI | |
| on: | |
| workflow_dispatch: | |
| push: | |
| pull_request: | |
| repository_dispatch: | |
| types: [linux-compile-test, install-test] | |
| jobs: | |
| linux_x86: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: prerequisites | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y hmmer ncbi-blast+ git libcurl4-openssl-dev build-essential curl | |
| - name: submodule checkout | |
| run: git submodule update --init --recursive | |
| - name: make | |
| run: cat version.txt; make -j -O | |
| - name: download db | |
| run: ./amrfinder -u | |
| - name: Software and DB version | |
| run: ./amrfinder --database_version | |
| - name: make test | |
| run: make test | |
| - name: test for no-overwrite database update (PD-3469 / https://github.com/ncbi/amr/issues/16) | |
| run: ./amrfinder -u 2>&1 | fgrep 'Skipping update' | |
| - name: make github_binaries | |
| run: make github_binaries | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: release-binary | |
| path: amrfinder_binaries_v*.tar.gz | |
| arm_x86: | |
| runs-on: ubuntu-24.04-arm | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: prerequisites | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y hmmer ncbi-blast+ git libcurl4-openssl-dev build-essential curl | |
| - name: submodule checkout | |
| run: git submodule update --init --recursive | |
| - name: make | |
| run: cat version.txt; make -j -O | |
| - name: download db | |
| run: ./amrfinder -u | |
| - name: Software and DB version | |
| run: ./amrfinder --database_version | |
| - name: make test | |
| run: make test | |
| - name: test for no-overwrite database update (PD-3469 / https://github.com/ncbi/amr/issues/16) | |
| run: ./amrfinder -u 2>&1 | fgrep 'Skipping update' | |
| - name: make github_binaries | |
| run: | | |
| make github_binaries | |
| version=`cat version.txt` | |
| mv amrfinder_binaries_v$version.tar.gz amrfinder_binaries_linux_aarch64_v$version.tar.gz | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: release-binary | |
| path: amrfinder_binaries_linux_aarch64_v*.tar.gz | |