Ability to force a certain IO instead of relying on file extension

spykeviewer/ui/main.ui

@@ -211,6 +211,23 @@ QGroupBox::title {
    </attribute>
    <widget class="QWidget" name="dockWidgetContents_8">
     <layout class="QGridLayout" name="gridLayout_6">
+     <item row="1" column="0">
+      <layout class="QFormLayout" name="formLayout">
+       <property name="fieldGrowthPolicy">
+        <enum>QFormLayout::AllNonFixedFieldsGrow</enum>
+       </property>
+       <item row="0" column="0">
+        <widget class="QLabel" name="label">
+         <property name="text">
+          <string>Format:</string>
+         </property>
+        </widget>
+       </item>
+       <item row="0" column="1">
+        <widget class="QComboBox" name="neoIOComboBox"/>
+       </item>
+      </layout>
+     </item>
      <item row="0" column="0">
       <widget class="QTreeView" name="fileTreeView">
        <property name="selectionMode">
@@ -233,13 +250,20 @@ QGroupBox::title {
        </attribute>
       </widget>
      </item>
-     <item row="1" column="0">
+     <item row="5" column="0">
       <widget class="QPushButton" name="loadFilesButton">
        <property name="text">
         <string>Load</string>
        </property>
       </widget>
      </item>
+     <item row="2" column="0">
+      <widget class="QPushButton" name="configureIOButton">
+       <property name="text">
+        <string>Configure Selected IO</string>
+       </property>
+      </widget>
+     </item>
     </layout>
    </widget>
   </widget>

spykeviewer/ui/main_ui.py

@@ -2,7 +2,7 @@
 
 # Form implementation generated from reading ui file '/home/rob/Spyke/viewer/spykeviewer/ui/main.ui'
 #
-# Created: Wed Jun 19 11:08:03 2013
+# Created: Thu Jun 20 17:09:43 2013
 #      by: PyQt4 UI code generator 4.9.3
 #
 # WARNING! All changes made in this file will be lost!
@@ -105,6 +105,16 @@ def setupUi(self, MainWindow):
         self.dockWidgetContents_8.setObjectName(_fromUtf8("dockWidgetContents_8"))
         self.gridLayout_6 = QtGui.QGridLayout(self.dockWidgetContents_8)
         self.gridLayout_6.setObjectName(_fromUtf8("gridLayout_6"))
+        self.formLayout = QtGui.QFormLayout()
+        self.formLayout.setFieldGrowthPolicy(QtGui.QFormLayout.AllNonFixedFieldsGrow)
+        self.formLayout.setObjectName(_fromUtf8("formLayout"))
+        self.label = QtGui.QLabel(self.dockWidgetContents_8)
+        self.label.setObjectName(_fromUtf8("label"))
+        self.formLayout.setWidget(0, QtGui.QFormLayout.LabelRole, self.label)
+        self.neoIOComboBox = QtGui.QComboBox(self.dockWidgetContents_8)
+        self.neoIOComboBox.setObjectName(_fromUtf8("neoIOComboBox"))
+        self.formLayout.setWidget(0, QtGui.QFormLayout.FieldRole, self.neoIOComboBox)
+        self.gridLayout_6.addLayout(self.formLayout, 1, 0, 1, 1)
         self.fileTreeView = QtGui.QTreeView(self.dockWidgetContents_8)
         self.fileTreeView.setSelectionMode(QtGui.QAbstractItemView.ExtendedSelection)
         self.fileTreeView.setUniformRowHeights(True)
@@ -116,7 +126,10 @@ def setupUi(self, MainWindow):
         self.gridLayout_6.addWidget(self.fileTreeView, 0, 0, 1, 1)
         self.loadFilesButton = QtGui.QPushButton(self.dockWidgetContents_8)
         self.loadFilesButton.setObjectName(_fromUtf8("loadFilesButton"))
-        self.gridLayout_6.addWidget(self.loadFilesButton, 1, 0, 1, 1)
+        self.gridLayout_6.addWidget(self.loadFilesButton, 5, 0, 1, 1)
+        self.configureIOButton = QtGui.QPushButton(self.dockWidgetContents_8)
+        self.configureIOButton.setObjectName(_fromUtf8("configureIOButton"))
+        self.gridLayout_6.addWidget(self.configureIOButton, 2, 0, 1, 1)
         self.filesDock.setWidget(self.dockWidgetContents_8)
         MainWindow.addDockWidget(QtCore.Qt.DockWidgetArea(2), self.filesDock)
         self.filterToolbar = QtGui.QToolBar(MainWindow)
@@ -335,7 +348,9 @@ def retranslateUi(self, MainWindow):
         self.historyDock.setWindowTitle(QtGui.QApplication.translate("MainWindow", "Command History", None, QtGui.QApplication.UnicodeUTF8))
         self.pluginDock.setWindowTitle(QtGui.QApplication.translate("MainWindow", "Plugins", None, QtGui.QApplication.UnicodeUTF8))
         self.filesDock.setWindowTitle(QtGui.QApplication.translate("MainWindow", "Files", None, QtGui.QApplication.UnicodeUTF8))
+        self.label.setText(QtGui.QApplication.translate("MainWindow", "Format:", None, QtGui.QApplication.UnicodeUTF8))
         self.loadFilesButton.setText(QtGui.QApplication.translate("MainWindow", "Load", None, QtGui.QApplication.UnicodeUTF8))
+        self.configureIOButton.setText(QtGui.QApplication.translate("MainWindow", "Configure Selected IO", None, QtGui.QApplication.UnicodeUTF8))
         self.filterToolbar.setWindowTitle(QtGui.QApplication.translate("MainWindow", "Filter Toolbar", None, QtGui.QApplication.UnicodeUTF8))
         self.pluginToolBar.setWindowTitle(QtGui.QApplication.translate("MainWindow", "Plugin Toolbar", None, QtGui.QApplication.UnicodeUTF8))
         self.actionExit.setText(QtGui.QApplication.translate("MainWindow", "&Exit", None, QtGui.QApplication.UnicodeUTF8))

spykeviewer/ui/main_window.py

@@ -42,9 +42,6 @@
 
 
 logger = logging.getLogger('spykeviewer')
-ch = logging.StreamHandler()
-ch.setLevel(logging.WARNING)
-logger.addHandler(ch)
 
 
 # Monkeypatch variable editor
@@ -511,11 +508,7 @@ def run_command(self, cmd, history=True, new_prompt=True):
         self.console.connect(self.console, SIGNAL("refresh()"),
                              self._append_python_history)
 
-        # Duplicate stdout, stderr and logging for console
-        ch = logging.StreamHandler(sys.stderr)
-        ch.setLevel(logging.WARNING)
-        logger.addHandler(ch)
-
+        # Duplicate stdout and stderr for console
         # Not using previous stdout, only stderr. Using StreamDuplicator
         # because spyder stream does not have flush() method...
         sys.stdout = StreamDuplicator([sys.stdout])

spykeviewer/ui/main_window_neo.py

@@ -219,6 +219,24 @@ def reload_neo_io_plugins(self):
                     cl._is_spyke_plugin = True
                     neo.io.iolist.insert(0, cl)
 
+        # Populate IO list
+        self.neoIOComboBox.clear()
+        iolabels = []
+
+        for io in neo.io.iolist:
+            if io.name:
+                iolabels.append((io.name, io))
+            else:
+                iolabels.append((io.__name__, io))
+
+        iolabels.sort(key=lambda x: x[0].lower())
+        self.neoIOComboBox.addItem('By extension')
+        self.neoIOComboBox.setItemData(0, None)
+        self.neoIOComboBox.addItems([l[0] for l in iolabels])
+
+        for i, l in enumerate(iolabels):
+            self.neoIOComboBox.setItemData(i + 1, l[1])
+
     def get_letter_id(self, id_, small=False):
         """ Return a name consisting of letters given an integer
         """
@@ -503,4 +521,9 @@ def on_actionFull_Load_triggered(self):
 
     @pyqtSignature("")
     def on_actionLazy_Load_triggered(self):
-        NeoDataProvider.lazy_mode = 1
+        NeoDataProvider.lazy_mode = 1
+
+    @pyqtSignature("int")
+    def on_neoIOComboBox_currentIndexChanged(self, index):
+        if index > 0:
+            NeoDataProvider.forced_io = self.neoIOComboBox.itemData(index)