Version 1.2.0
What's new:
- new function:
navis.betweeness_centrality
- new function:
navis.combine_neurons
to simply concatenate neurons - new set of persistence functions:
navis.persistence_vectors
,navis.persistence_points
andnavis.persistence_distances
- improvements to various functions: e.g.
navis.bending_flow
,navis.flow_centrality
,navis.split_axon_dendrite
and
navis.longest_neurite
navis.read_swc
now accepts alimit
parameter that enables reading on the the first N neurons (useful to sample large collections)navis.write_nrrd
andnavis.read_nrrd
can now be used to write/read Dotprops to/from NRRD filesnavis.nblast
(and variants) now accept aprecision
parameter that allows setting the datatype for the matrix (useful to keep memory usage low for large NBLASTs)navis.simplify_mesh
(and thereforenavis.downsample_neuron
with skeletons) now uses thepyfqmr
if present (much faster!)- improved the interface to Neuromorpho
- added a new interface with the Allen Cell Types Atlas (see
navis.interfaces.allen_celltypes
) - myriads of small and big bugfixes
Thanks to @clbarnes and @Robbie1977 for contributing various PRs!