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Version 1.2.0

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@schlegelp schlegelp released this 24 Feb 22:11
· 818 commits to master since this release

What's new:

  • new function: navis.betweeness_centrality
  • new function: navis.combine_neurons to simply concatenate neurons
  • new set of persistence functions: navis.persistence_vectors, navis.persistence_points and navis.persistence_distances
  • improvements to various functions: e.g. navis.bending_flow, navis.flow_centrality, navis.split_axon_dendrite and
    navis.longest_neurite
  • navis.read_swc now accepts a limit parameter that enables reading on the the first N neurons (useful to sample large collections)
  • navis.write_nrrd and navis.read_nrrd can now be used to write/read Dotprops to/from NRRD files
  • navis.nblast (and variants) now accept a precision parameter that allows setting the datatype for the matrix (useful to keep memory usage low for large NBLASTs)
  • navis.simplify_mesh (and therefore navis.downsample_neuron with skeletons) now uses the pyfqmr if present (much faster!)
  • improved the interface to Neuromorpho
  • added a new interface with the Allen Cell Types Atlas (see navis.interfaces.allen_celltypes)
  • myriads of small and big bugfixes

Thanks to @clbarnes and @Robbie1977 for contributing various PRs!