Initial commit

.coveragerc

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+[run]
+omit =
+    navis/__init__.py
+    navis/interfaces/blender.py
+    navis/interfaces/cytoscape.py
+    navis/interfaces/r.py
+    setup.py

.gitattributes

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+# Auto detect text files and perform LF normalization
+* text=auto

.gitignore

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+# Byte-compiled / optimized / DLL files
+__pycache__/
+/navis/__pycache__
+.ipynb_checkpoints/
+*.py[cod]
+*$py.class
+*.pyc
+
+# Test config 
+/navis/tests/config_test.py
+
+# Coverage
+/navis/tests/htmlcov
+
+# C extensions
+*.so
+
+# OS generated files
+.DS_Store
+.DS_Store?
+._*
+.Spotlight-V100
+.Trashes
+ehthumbs.db
+Thumbs.db
+
+# Distribution / packaging
+.Python
+env/
+build/
+generated/
+develop-eggs/
+#dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+.hypothesis/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# pyenv
+.python-version
+
+# celery beat schedule file
+celerybeat-schedule
+
+# SageMath parsed files
+*.sage.py
+
+# dotenv
+.env
+
+# virtualenv
+.venv
+venv/
+ENV/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+*.swc
+*.json
+MANIFEST

.travis.yml

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+language: python
+python:
+  - "3.5"
+# command to install dependencies
+install:
+  - pip install -U pip
+  - pip install -U setuptools
+  - pip install -e .
+  - pip install coveralls
+  - pip install pyoctree # additional requirement for fast intersections
+  - pip install shapely # additional requirement for 2d shapes
+  - pip install pytest-cov # to get .coverage report via pytest
+  - pip install imageio # necessary for pymaid.tiles
+# initialise a display
+before_script:
+  - "export DISPLAY=:99.0"
+  - "sh -e /etc/init.d/xvfb start"
+  - sleep 3 # give xvfb some time to start
+# command to run tests
+script: pytest --cov=./ --verbose
+# push coverage results to coverall
+after_success:
+  - coveralls