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update changelog
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schlegelp committed May 12, 2021
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* - Version
- Date
-
* - 0.6.0
- 12/05/21
- - new functions: :func:`navis.prune_at_depth`, :func:`navis.read_rda`, :func:`navis.cell_body_fiber`
- many spatial parameters (e.g. in :func:`navis.resample_neuron`) can now be passed as unit string, e.g. ``"5 microns"``
- many functions now accept a ``parallel=True`` parameter to use multiple cores (depends on ``pathos``)
- :func:`navis.read_swc` and :func:`navis.write_swc` can now read/write directly from/to zip files
- reworked :func:`navis.read_json`, and :func:`navis.write_json`
- ``nblast`` functions now let you use your own scoring function (thanks to Ben Pedigo!)
- added ``threshold`` parameter to :func:`navis.read_nrrd`
- fixed NBLAST progress bars in notebook environments
- :func:`navis.nblast_smart`: drop ``quantile`` and add ``score`` criterion
- new functions to map units into neuron space: :func:`~BaseNeuron.map_units` and :func:`navis.to_neuron_space`
- functions that manipulate neurons will now always return something (even if ``inplace=True``)
- :func:`navis.cut_neuron` now always returns a single ``NeuronList``
- :func:`navis.mirror_brain` now works with ``k=0/None`` Dotprops
- all ``reroot_to_soma`` parameters have been renamed to ``reroot_soma``
- :class:`navis.TreeNeuron` now has a ``soma_pos`` property that can also be used to set the soma by position
- fixed a couple bugs with `CMTK` transforms
- made transforms more robust against points outside deformation fields
- better deal if node ID of soma is ``0`` (e.g. during plotting)
- :func:`navis.neuron2tangents` now drops zero-length vectors
- fixed :func:`navis.guess_radius`
* - 0.5.3
- 10/04/18
- 10/04/21
- - new functions: :func:`navis.nblast_smart`, :func:`navis.write_google_binary`, :func:`navis.synblast`, :func:`navis.symmetrize_brain`
- :func:`navis.plot3d` (plotly): ``hover_name=True`` will show neuron names on hover
- :func:`navis.plot2d`: ``rasterize=True`` will rasterize neurons (but not axes or labels) to help keep file sizes low
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