Adding ONT functionality to RAW and CLEAN#133

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simonleandergrimm wants to merge 18 commits intodevfrom simon-ont-raw-clean

+123-19

Commits on Dec 14, 2024

Merge branch 'single-read-raw-clean' into ont-raw-clean
simonleandergrimm
committed

Commits on Dec 16, 2024

Update main.nf
simonleandergrimm
authored

Commits on Dec 18, 2024

Merge branch 'simon-ont-raw-clean' of https://github.com/naobservatory/mgs-workflow into simon-ont-raw-clean
simonleandergrimm
committed
Merge branch 'single-read-raw-clean' into simon-ont-raw-clean
simonleandergrimm
committed
edited FASTP logic to take into account fastp_single and fastp_paired
simonleandergrimm
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Renamed summarize_multiqc processes/folders/scripts to not have pair in the name.
simonleandergrimm
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Adopting testing set up from profile ont branch
simonleandergrimm
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Fixed summarize multiqc typo and uneeded single-end variable for fastp
simonleandergrimm
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dropped unneeded brackets.
simonleandergrimm
committed

Commits on Dec 20, 2024

Commits on Jan 6, 2025

Merge branch 'dev' into simon-ont-raw-clean
simonleandergrimm
authored

Commits on Jan 7, 2025