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Porting RAW and CLEAN to ONT data. #121

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@simonleandergrimm simonleandergrimm commented Dec 9, 2024

Open questions:

  • Rename n_read_pairs in summarize-multiqc-pair.R to n_sequences`?
  • Removing polya tails with cutadapt?
  • Handling files that are empty after cleaning (currently those trip up MultiQC and are likely to cause errors in later stages of the pipeline.)
  • Double check if fastqc is appropriate for ONT data.

@simonleandergrimm simonleandergrimm changed the base branch from master to single-read-raw-clean December 14, 2024 17:07
@simonleandergrimm simonleandergrimm changed the title Draft PR for porting RAW and CLEAN to ONT data. Porting RAW and CLEAN to ONT data. Dec 14, 2024
@simonleandergrimm simonleandergrimm deleted the ont-raw-clean branch December 18, 2024 13:21
@simonleandergrimm simonleandergrimm restored the ont-raw-clean branch December 18, 2024 13:29
@simonleandergrimm simonleandergrimm deleted the ont-raw-clean branch December 18, 2024 20:42
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