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Update nextflow.config
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simonleandergrimm authored Dec 3, 2024
1 parent 61ea369 commit ad640c6
Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions test-data/nextflow.config
Original file line number Diff line number Diff line change
@@ -6,8 +6,8 @@ params {
mode = "run"

// Directories
base_dir = "s3://nao-mgs-simon/test" // Parent for working and output directories (can be S3)
ref_dir = "s3://nao-mgs-wb/index-20241113/output" // Reference/index directory (generated by index workflow)
base_dir = "s3://nao-mgs-wb/test-batch" // Parent for working and output directories (can be S3)
ref_dir = "s3://nao-mgs-wb/index-20241113/output" // Reference/index directory (generated by index workflow)

// Files
sample_sheet = "${launchDir}/samplesheet.csv" // Path to library TSV
@@ -34,4 +34,4 @@ includeConfig "${projectDir}/configs/containers.config"
includeConfig "${projectDir}/configs/resources.config"
includeConfig "${projectDir}/configs/profiles.config"
includeConfig "${projectDir}/configs/output.config"
process.queue = "will-batch-queue" // AWS Batch job queue
process.queue = "will-batch-queue" // AWS Batch job queue

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