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Compartmentalize DGL and torch usage to histocartography and cg_gnn_helper #273

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merged 4 commits into from
Dec 14, 2023

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CarlinLiao
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To close #271. Future changes will extricate histocartography and cg_gnn_helper into a separate plugin as described in #272.

@CarlinLiao CarlinLiao added the refactor Code change preserving functionality label Dec 11, 2023
@CarlinLiao CarlinLiao self-assigned this Dec 11, 2023
@CarlinLiao CarlinLiao marked this pull request as ready for review December 13, 2023 00:46
@CarlinLiao
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All tests pass.

@jimmymathews
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jimmymathews commented Dec 13, 2023

In testing I encountered an issue I have encountered before, where the prereqs image has outdated layers (apt index/servers list I think). To deal with this I added a "NOCACHE=1" option to the Makefile, which one can use in such situations.

@jimmymathews jimmymathews merged commit b8fcb2d into main Dec 14, 2023
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@CarlinLiao CarlinLiao deleted the issue271 branch December 14, 2023 16:48
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Could you release this to pip?

@jimmymathews
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Done.

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Compartmentalize dependency on DGL and torch to cg-gnn model
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