follow the updated spt-plugin structure

nadeemlab · Dec 29, 2023 · 84f318d · 84f318d
1 parent 4a1ec0c
commit 84f318d
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/spatialprofilingtoolbox/graphs/template.config b/spatialprofilingtoolbox/graphs/template.config
@@ -18,4 +18,3 @@ target_name = None
 exclude_unlabeled = false
 n_neighbors = 5
 threshold = None
-random_seed = None
diff --git a/spatialprofilingtoolbox/workflow/assets/cggnn.nf b/spatialprofilingtoolbox/workflow/assets/cggnn.nf
@@ -105,8 +105,9 @@ process train {
     merge_rois_option=\$( if [[ "${merge_rois}" == "true" ]]; then echo "--merge_rois"; fi)
 
     spt-plugin-train-on-graphs
-        --cg_directory ${working_directory} \
-        --config_path ${graph_config_file}
+        --input_directory ${working_directory} \
+        --config_path ${graph_config_file} \
+        --output_directory ${working_directory}
     """
 }