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Bump snakemake from 6.0.2 to 7.19.1 in /dependencies #585

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@dependabot dependabot bot commented on behalf of github Dec 13, 2022

Bumps snakemake from 6.0.2 to 7.19.1.

Release notes

Sourced from snakemake's releases.

v7.19.1

7.19.1 (2022-12-13)

Bug Fixes

  • improved default resources parsing (also allowing to deactivate a default resource via setting it to None) (#2006) (e6cdb32)

Documentation

v7.19.0

7.19.0 (2022-12-13)

Features

  • add keyword to gridftp remote provide to specify the number or disable usage of multiple data stream (#1974) (3e6675d)
  • provide information about temp, pipe, and service files in --summary (#1977) (c7c7776)
  • native SLURM support (--slurm, see docs) (#1015) (c7ea059)

Bug Fixes

  • avoid logfile writing in case of dryrun; better hints in case of incomplete checkpoints (#1994) (a022705)
  • handle case where zenodo deposition does not return files (#2004) (b63c4a7)
  • issue #1882 WorkflowError: Metadata can't be created as it already exists (Windows) (#1971) (d4484e6)
  • json validation error with markdown cells (#1986) (6c26f75)

v7.18.2

7.18.2 (2022-11-10)

Bug Fixes

  • Change ratelimiter dependency to throttler (#1958) (50b8f16)
  • fixed problem with leaked modifications when inheriting multiple times from the same rule (#1957) (2475cbc)
  • forwarding --keep-incomplete to cluster executor (#1951) (2894c7d)
  • show input files on job error (#1949) (ad21631)

v7.18.1

7.18.1 (2022-11-03)

... (truncated)

Changelog

Sourced from snakemake's changelog.

7.19.1 (2022-12-13)

Bug Fixes

  • improved default resources parsing (also allowing to deactivate a default resource via setting it to None) (#2006) (e6cdb32)

Documentation

7.19.0 (2022-12-13)

Features

  • add keyword to gridftp remote provide to specify the number or disable usage of multiple data stream (#1974) (3e6675d)
  • provide information about temp, pipe, and service files in --summary (#1977) (c7c7776)
  • native SLURM support (--slurm, see docs) (#1015) (c7ea059)

Bug Fixes

  • avoid logfile writing in case of dryrun; better hints in case of incomplete checkpoints (#1994) (a022705)
  • handle case where zenodo deposition does not return files (#2004) (b63c4a7)
  • issue #1882 WorkflowError: Metadata can't be created as it already exists (Windows) (#1971) (d4484e6)
  • json validation error with markdown cells (#1986) (6c26f75)

7.18.2 (2022-11-10)

Bug Fixes

  • Change ratelimiter dependency to throttler (#1958) (50b8f16)
  • fixed problem with leaked modifications when inheriting multiple times from the same rule (#1957) (2475cbc)
  • forwarding --keep-incomplete to cluster executor (#1951) (2894c7d)
  • show input files on job error (#1949) (ad21631)

7.18.1 (2022-11-03)

Bug Fixes

  • regression ValueError introduced with 7.17.2 (#1947) (53a4fca)

... (truncated)

Commits

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Bumps [snakemake](https://github.com/snakemake/snakemake) from 6.0.2 to 7.19.1.
- [Release notes](https://github.com/snakemake/snakemake/releases)
- [Changelog](https://github.com/snakemake/snakemake/blob/main/CHANGELOG.md)
- [Commits](snakemake/snakemake@v6.0.2...v7.19.1)

---
updated-dependencies:
- dependency-name: snakemake
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update Python code labels Dec 13, 2022
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dependabot bot commented on behalf of github Jan 18, 2023

Superseded by #603.

@dependabot dependabot bot closed this Jan 18, 2023
@dependabot dependabot bot deleted the dependabot/pip/dependencies/snakemake-7.19.1 branch January 18, 2023 19:08
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