Update module_trait_relationships_heatmap.ipynb

mortazavilab · Feb 8, 2024 · d18c7b3 · d18c7b3
1 parent 4274533
commit d18c7b3
Showing 1 changed file with 8 additions and 7 deletions.
diff --git a/tutorials/module_trait_relationships_heatmap.ipynb b/tutorials/module_trait_relationships_heatmap.ipynb
@@ -34,16 +34,16 @@
     }
    ],
    "source": [
-    "import sys\n",
-    "sys.path.insert(0, '/Users/nargesrezaie/Documents/MortazaviLab/PyWGCNA')\n",
+    "#import sys\n",
+    "#sys.path.insert(0, '/Users/nargesrezaie/Documents/MortazaviLab/PyWGCNA')\n",
     "import PyWGCNA\n",
     "pyWGCNA_5xFAD = PyWGCNA.readWGCNA(\"5xFAD.p\")\n",
     "pyWGCNA_5xFAD.save = False"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 6,
+   "execution_count": 7,
    "id": "3fe400c3",
    "metadata": {},
    "outputs": [
@@ -60,7 +60,6 @@
    ],
    "source": [
     "pyWGCNA_5xFAD.module_trait_relationships_heatmap(metaData=['Age', 'Tissue', 'Sex', 'Genotype'],\n",
-    "                                                 show=True, \n",
     "                                                 alternative='two-sided')"
    ]
   },
@@ -69,12 +68,14 @@
    "id": "3ae0e354",
    "metadata": {},
    "source": [
-    "if we want to look at the age as on row in our module trait relationships heatmap, we should change the dtype of age."
+    "if we want to look at the age as on row in our module trait relationships heatmap, we should change the dtype of age.\n",
+    "\n",
+    "Here you can see the modules with higher correlation with later time points have positive correlation while those correlated with earlier time points has negative correlation."
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 5,
+   "execution_count": 3,
    "id": "3384fa7c",
    "metadata": {},
    "outputs": [
@@ -112,7 +113,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 4,
+   "execution_count": 6,
    "id": "23a98ccc",
    "metadata": {},
    "outputs": [