PYTHON-4813 Update specification documentation links (#1977)

README.md

@@ -11,7 +11,7 @@ The PyMongo distribution contains tools for interacting with MongoDB
 database from Python. The `bson` package is an implementation of the
 [BSON format](http://bsonspec.org) for Python. The `pymongo` package is
 a native Python driver for MongoDB. The `gridfs` package is a
-[gridfs](https://github.com/mongodb/specifications/blob/master/source/gridfs/gridfs-spec.rst/)
+[gridfs](https://github.com/mongodb/specifications/blob/master/source/gridfs/gridfs-spec.md/)
 implementation on top of `pymongo`.
 
 PyMongo supports MongoDB 4.0, 4.2, 4.4, 5.0, 6.0, 7.0, and 8.0.

bson/json_util.py

@@ -22,7 +22,7 @@
 when :const:`CANONICAL_JSON_OPTIONS` or :const:`LEGACY_JSON_OPTIONS` is
 provided, respectively.
 
-.. _Extended JSON: https://github.com/mongodb/specifications/blob/master/source/extended-json.rst
+.. _Extended JSON: https://github.com/mongodb/specifications/blob/master/source/extended-json/extended-json.md
 
 Example usage (deserialization):
 

doc/api/index.rst

@@ -6,7 +6,7 @@ interacting with MongoDB. :mod:`bson` is an implementation of the
 `BSON format <http://bsonspec.org>`_, :mod:`pymongo` is a
 full-featured driver for MongoDB, and :mod:`gridfs` is a set of tools
 for working with the `GridFS
-<https://github.com/mongodb/specifications/blob/master/source/gridfs/gridfs-spec.rst/>`_ storage
+<https://github.com/mongodb/specifications/blob/master/source/gridfs/gridfs-spec.md/>`_ storage
 specification.
 
 .. toctree::

doc/changelog.rst

@@ -1027,7 +1027,7 @@ See the `PyMongo 4.0 release notes in JIRA`_ for the list of resolved issues
 in this release.
 
 .. _PyMongo 4.0 release notes in JIRA: https://jira.mongodb.org/secure/ReleaseNote.jspa?projectId=10004&version=18463
-.. _DBRef specification: https://github.com/mongodb/specifications/blob/5a8c8d7/source/dbref.rst
+.. _DBRef specification: https://github.com/mongodb/specifications/blob/master/source/dbref/dbref.md
 
 Changes in Version 3.13.0 (2022/11/01)
 --------------------------------------
@@ -1562,7 +1562,7 @@ Unavoidable breaking changes:
   bumped to 1.16.0. This is a breaking change for applications that use
   PyMongo's SRV support with a version of ``dnspython`` older than 1.16.0.
 
-.. _URI options specification: https://github.com/mongodb/specifications/blob/master/source/uri-options/uri-options.rst
+.. _URI options specification: https://github.com/mongodb/specifications/blob/master/source/uri-options/uri-options.md
 
 
 Issues Resolved
@@ -1586,7 +1586,7 @@ Changes in Version 3.8.0 (2019/04/22)
   must upgrade to PyPy3.5+.
 
 - :class:`~bson.objectid.ObjectId` now implements the `ObjectID specification
-  version 0.2 <https://github.com/mongodb/specifications/blob/master/source/objectid.rst>`_.
+  version 0.2 <https://github.com/mongodb/specifications/blob/master/source/bson-objectid/objectid.md>`_.
 - For better performance and to better follow the GridFS spec,
   :class:`~gridfs.grid_file.GridOut` now uses a single cursor to read all the
   chunks in the file. Previously, each chunk in the file was queried
@@ -1948,7 +1948,7 @@ Highlights include:
   :class:`~pymongo.operations.UpdateOne`, and
   :class:`~pymongo.operations.UpdateMany`.
 - Implemented the `MongoDB Extended JSON
-  <https://github.com/mongodb/specifications/blob/master/source/extended-json.rst>`_
+  <https://github.com/mongodb/specifications/blob/master/source/extended-json/extended-json.md>`_
   specification.
 - :class:`~bson.decimal128.Decimal128` now works when cdecimal is installed.
 - PyMongo is now tested against a wider array of operating systems and CPU

doc/conf.py

@@ -85,7 +85,7 @@
 # wiki.centos.org has been flakey.
 # sourceforge.net is giving a 403 error, but is still accessible from the browser.
 linkcheck_ignore = [
-    "https://github.com/mongodb/specifications/blob/master/source/server-discovery-and-monitoring/server-monitoring.rst#requesting-an-immediate-check",
+    "https://github.com/mongodb/specifications/blob/master/source/server-discovery-and-monitoring/server-monitoring.md#requesting-an-immediate-check",
     "https://github.com/mongodb/libmongocrypt/blob/master/bindings/python/README.rst#installing-from-source",
     r"https://wiki.centos.org/[\w/]*",
     r"http://sourceforge.net/",

doc/developer/periodic_executor.rst

@@ -106,7 +106,7 @@ Thus the current design of periodic executors is surprisingly simple: they
 do a simple ``time.sleep`` for a half-second, check if it is time to wake or
 terminate, and sleep again.
 
-.. _Server Discovery And Monitoring Spec: https://github.com/mongodb/specifications/blob/master/source/server-discovery-and-monitoring/server-monitoring.rst#requesting-an-immediate-check
+.. _Server Discovery And Monitoring Spec: https://github.com/mongodb/specifications/blob/master/source/server-discovery-and-monitoring/server-monitoring.md#requesting-an-immediate-check
 
 .. _PYTHON-863: https://jira.mongodb.org/browse/PYTHON-863
 

doc/examples/uuid.rst

@@ -84,7 +84,7 @@ Finally, the same UUID would historically be serialized by the Java driver as::
 .. note:: For in-depth information about the the byte-order historically
    used by different drivers, see the `Handling of Native UUID Types
    Specification
-   <https://github.com/mongodb/specifications/blob/master/source/uuid.rst>`_.
+   <https://github.com/mongodb/specifications/blob/master/source/bson-binary-uuid/uuid.md>`_.
 
 This difference in the byte-order of UUIDs encoded by different drivers can
 result in highly unintuitive behavior in some scenarios. We detail two such

doc/migrate-to-pymongo4.rst

@@ -118,7 +118,7 @@ Renamed URI options
 
 Several deprecated URI options have been renamed to the standardized
 option names defined in the
-`URI options specification <https://github.com/mongodb/specifications/blob/master/source/uri-options/uri-options.rst>`_.
+`URI options specification <https://github.com/mongodb/specifications/blob/master/source/uri-options/uri-options.md>`_.
 The old option names and their renamed equivalents are summarized in the table
 below. Some renamed options have different semantics from the option being
 replaced as noted in the 'Migration Notes' column.
@@ -965,7 +965,7 @@ correct type. Otherwise the document is returned as normal. Previously, any
 subdocument containing a ``$ref`` field would be decoded as a
 :class:`~bson.dbref.DBRef`.
 
-.. _DBRef specification: https://github.com/mongodb/specifications/blob/5a8c8d7/source/dbref.rst
+.. _DBRef specification: https://github.com/mongodb/specifications/blob/master/source/dbref/dbref.md
 
 Encoding a UUID raises an error by default
 ..........................................

pymongo/asynchronous/mongo_client.py

@@ -221,7 +221,7 @@ def __init__(
         <https://en.wikipedia.org/wiki/TXT_record>`_. See the
         `Initial DNS Seedlist Discovery spec
         <https://github.com/mongodb/specifications/blob/master/source/
-        initial-dns-seedlist-discovery/initial-dns-seedlist-discovery.rst>`_
+        initial-dns-seedlist-discovery/initial-dns-seedlist-discovery.md>`_
         for more details. Note that the use of SRV URIs implicitly enables
         TLS support. Pass tls=false in the URI to override.
 
@@ -367,7 +367,7 @@ def __init__(
             :meth:`~pymongo.asynchronous.collection.AsyncCollection.aggregate` using the ``$out``
             pipeline operator and any operation with an unacknowledged write
             concern (e.g. {w: 0})). See
-            https://github.com/mongodb/specifications/blob/master/source/retryable-writes/retryable-writes.rst
+            https://github.com/mongodb/specifications/blob/master/source/retryable-writes/retryable-writes.md
           - `retryReads`: (boolean) Whether supported read operations
             executed within this AsyncMongoClient will be retried once after a
             network error. Defaults to ``True``.
@@ -394,7 +394,7 @@ def __init__(
             transient errors such as network failures, database upgrades, and
             replica set failovers. For an exact definition of which errors
             trigger a retry, see the `retryable reads specification
-            <https://github.com/mongodb/specifications/blob/master/source/retryable-reads/retryable-reads.rst>`_.
+            <https://github.com/mongodb/specifications/blob/master/source/retryable-reads/retryable-reads.md>`_.
 
           - `compressors`: Comma separated list of compressors for wire
             protocol compression. The list is used to negotiate a compressor

pymongo/pool_options.py

@@ -216,7 +216,7 @@ def _metadata_env() -> dict[str, Any]:
 _MAX_METADATA_SIZE = 512
 
 
-# See: https://github.com/mongodb/specifications/blob/5112bcc/source/mongodb-handshake/handshake.rst#limitations
+# See: https://github.com/mongodb/specifications/blob/master/source/mongodb-handshake/handshake.md#limitations
 def _truncate_metadata(metadata: MutableMapping[str, Any]) -> None:
     """Perform metadata truncation."""
     if len(bson.encode(metadata)) <= _MAX_METADATA_SIZE:

pymongo/synchronous/mongo_client.py

@@ -216,7 +216,7 @@ def __init__(
         <https://en.wikipedia.org/wiki/TXT_record>`_. See the
         `Initial DNS Seedlist Discovery spec
         <https://github.com/mongodb/specifications/blob/master/source/
-        initial-dns-seedlist-discovery/initial-dns-seedlist-discovery.rst>`_
+        initial-dns-seedlist-discovery/initial-dns-seedlist-discovery.md>`_
         for more details. Note that the use of SRV URIs implicitly enables
         TLS support. Pass tls=false in the URI to override.
 
@@ -365,7 +365,7 @@ def __init__(
             :meth:`~pymongo.collection.Collection.aggregate` using the ``$out``
             pipeline operator and any operation with an unacknowledged write
             concern (e.g. {w: 0})). See
-            https://github.com/mongodb/specifications/blob/master/source/retryable-writes/retryable-writes.rst
+            https://github.com/mongodb/specifications/blob/master/source/retryable-writes/retryable-writes.md
           - `retryReads`: (boolean) Whether supported read operations
             executed within this MongoClient will be retried once after a
             network error. Defaults to ``True``.
@@ -392,7 +392,7 @@ def __init__(
             transient errors such as network failures, database upgrades, and
             replica set failovers. For an exact definition of which errors
             trigger a retry, see the `retryable reads specification
-            <https://github.com/mongodb/specifications/blob/master/source/retryable-reads/retryable-reads.rst>`_.
+            <https://github.com/mongodb/specifications/blob/master/source/retryable-reads/retryable-reads.md>`_.
 
           - `compressors`: Comma separated list of compressors for wire
             protocol compression. The list is used to negotiate a compressor

test/asynchronous/test_auth.py

@@ -375,7 +375,7 @@ async def test_scram_sha1(self):
             await db.command("dbstats")
 
 
-# https://github.com/mongodb/specifications/blob/master/source/auth/auth.rst#scram-sha-256-and-mechanism-negotiation
+# https://github.com/mongodb/specifications/blob/master/source/auth/auth.md#scram-sha-256-and-mechanism-negotiation
 class TestSCRAM(AsyncIntegrationTest):
     @async_client_context.require_auth
     @async_client_context.require_version_min(3, 7, 2)

test/asynchronous/test_encryption.py

@@ -1610,7 +1610,7 @@ async def test_automatic(self):
         return await self._test_automatic(expected_document_extjson, {"secret_gcp": "string0"})
 
 
-# https://github.com/mongodb/specifications/blob/master/source/client-side-encryption/tests/README.rst#deadlock-tests
+# https://github.com/mongodb/specifications/blob/master/source/client-side-encryption/tests/README.md#deadlock-tests
 class TestDeadlockProse(AsyncEncryptionIntegrationTest):
     async def asyncSetUp(self):
         self.client_test = await self.async_rs_or_single_client(
@@ -1837,7 +1837,7 @@ async def test_case_8(self):
         self.assertEqual(len(self.topology_listener.results["opened"]), 1)
 
 
-# https://github.com/mongodb/specifications/blob/master/source/client-side-encryption/tests/README.rst#14-decryption-events
+# https://github.com/mongodb/specifications/blob/master/source/client-side-encryption/tests/README.md#14-decryption-events
 class TestDecryptProse(AsyncEncryptionIntegrationTest):
     async def asyncSetUp(self):
         self.client = async_client_context.client
@@ -1909,7 +1909,7 @@ async def test_04_decrypt_success(self):
         self.assertEqual(event.reply["cursor"]["firstBatch"][0]["encrypted"], self.cipher_text)
 
 
-# https://github.com/mongodb/specifications/blob/master/source/client-side-encryption/tests/README.rst#bypass-spawning-mongocryptd
+# https://github.com/mongodb/specifications/blob/master/source/client-side-encryption/tests/README.md#bypass-spawning-mongocryptd
 class TestBypassSpawningMongocryptdProse(AsyncEncryptionIntegrationTest):
     @unittest.skipIf(
         os.environ.get("TEST_CRYPT_SHARED"),
@@ -1990,7 +1990,7 @@ async def test_via_loading_shared_library(self):
         with self.assertRaises(ServerSelectionTimeoutError):
             await no_mongocryptd_client.db.command("ping")
 
-    # https://github.com/mongodb/specifications/blob/master/source/client-side-encryption/tests/README.rst#20-bypass-creating-mongocryptd-client-when-shared-library-is-loaded
+    # https://github.com/mongodb/specifications/blob/master/source/client-side-encryption/tests/README.md#20-bypass-creating-mongocryptd-client-when-shared-library-is-loaded
     @unittest.skipUnless(os.environ.get("TEST_CRYPT_SHARED"), "crypt_shared lib is not installed")
     async def test_client_via_loading_shared_library(self):
         connection_established = False
@@ -2066,7 +2066,7 @@ async def test_invalid_hostname_in_kms_certificate(self):
             await self.client_encrypted.create_data_key("aws", master_key=key)
 
 
-# https://github.com/mongodb/specifications/blob/master/source/client-side-encryption/tests/README.rst#kms-tls-options-tests
+# https://github.com/mongodb/specifications/blob/master/source/client-side-encryption/tests/README.md#kms-tls-options-tests
 class TestKmsTLSOptions(AsyncEncryptionIntegrationTest):
     @unittest.skipUnless(any(AWS_CREDS.values()), "AWS environment credentials are not set")
     async def asyncSetUp(self):
@@ -2272,7 +2272,7 @@ async def test_06_named_kms_providers_apply_tls_options_kmip(self):
         await self.client_encryption_with_names.create_data_key("kmip:with_tls")
 
 
-# https://github.com/mongodb/specifications/blob/50e26fe/source/client-side-encryption/tests/README.rst#unique-index-on-keyaltnames
+# https://github.com/mongodb/specifications/blob/50e26fe/source/client-side-encryption/tests/README.md#unique-index-on-keyaltnames
 class TestUniqueIndexOnKeyAltNamesProse(AsyncEncryptionIntegrationTest):
     async def asyncSetUp(self):
         self.client = async_client_context.client
@@ -2303,7 +2303,7 @@ async def test_02_add_key_alt_name(self):
         assert key_doc["keyAltNames"] == ["def"]
 
 
-# https://github.com/mongodb/specifications/blob/d4c9432/source/client-side-encryption/tests/README.rst#explicit-encryption
+# https://github.com/mongodb/specifications/blob/d4c9432/source/client-side-encryption/tests/README.md#explicit-encryption
 class TestExplicitQueryableEncryption(AsyncEncryptionIntegrationTest):
     @async_client_context.require_no_standalone
     @async_client_context.require_version_min(7, 0, -1)
@@ -2423,7 +2423,7 @@ async def test_05_roundtrip_encrypted_unindexed(self):
         self.assertEqual(decrypted, val)
 
 
-# https://github.com/mongodb/specifications/blob/072601/source/client-side-encryption/tests/README.rst#rewrap
+# https://github.com/mongodb/specifications/blob/072601/source/client-side-encryption/tests/README.md#rewrap
 class TestRewrapWithSeparateClientEncryption(AsyncEncryptionIntegrationTest):
     MASTER_KEYS: Mapping[str, Mapping[str, Any]] = {
         "aws": {
@@ -2505,7 +2505,7 @@ async def run_test(self, src_provider, dst_provider):
             )
 
 
-# https://github.com/mongodb/specifications/blob/5cf3ed/source/client-side-encryption/tests/README.rst#on-demand-aws-credentials
+# https://github.com/mongodb/specifications/blob/5cf3ed/source/client-side-encryption/tests/README.md#on-demand-aws-credentials
 class TestOnDemandAWSCredentials(AsyncEncryptionIntegrationTest):
     async def asyncSetUp(self):
         await super().asyncSetUp()
@@ -2869,7 +2869,7 @@ async def test_accepts_trim_factor_0(self):
         assert len(payload) > len(self.payload_defaults)
 
 
-# https://github.com/mongodb/specifications/blob/master/source/client-side-encryption/tests/README.rst#automatic-data-encryption-keys
+# https://github.com/mongodb/specifications/blob/master/source/client-side-encryption/tests/README.md#automatic-data-encryption-keys
 class TestAutomaticDecryptionKeys(AsyncEncryptionIntegrationTest):
     @async_client_context.require_no_standalone
     @async_client_context.require_version_min(7, 0, -1)

test/asynchronous/unified_format.py

@@ -14,7 +14,7 @@
 
 """Unified test format runner.
 
-https://github.com/mongodb/specifications/blob/master/source/unified-test-format/unified-test-format.rst
+https://github.com/mongodb/specifications/blob/master/source/unified-test-format/unified-test-format.md
 """
 from __future__ import annotations
 
@@ -431,7 +431,7 @@ class UnifiedSpecTestMixinV1(AsyncIntegrationTest):
     """Mixin class to run test cases from test specification files.
 
     Assumes that tests conform to the `unified test format
-    <https://github.com/mongodb/specifications/blob/master/source/unified-test-format/unified-test-format.rst>`_.
+    <https://github.com/mongodb/specifications/blob/master/source/unified-test-format/unified-test-format.md>`_.
 
     Specification of the test suite being currently run is available as
     a class attribute ``TEST_SPEC``.

test/test_auth.py

@@ -373,7 +373,7 @@ def test_scram_sha1(self):
             db.command("dbstats")
 
 
-# https://github.com/mongodb/specifications/blob/master/source/auth/auth.rst#scram-sha-256-and-mechanism-negotiation
+# https://github.com/mongodb/specifications/blob/master/source/auth/auth.md#scram-sha-256-and-mechanism-negotiation
 class TestSCRAM(IntegrationTest):
     @client_context.require_auth
     @client_context.require_version_min(3, 7, 2)

test/test_dbref.py

@@ -128,7 +128,7 @@ def test_dbref_hash(self):
         self.assertNotEqual(hash(dbref_1a), hash(dbref_2a))
 
 
-# https://github.com/mongodb/specifications/blob/master/source/dbref.rst#test-plan
+# https://github.com/mongodb/specifications/blob/master/source/dbref/dbref.md#test-plan
 class TestDBRefSpec(unittest.TestCase):
     def test_decoding_1_2_3(self):
         doc: Any