Release v0.3.4 · monarch-initiative/ontogpt

This release includes a variety of bugfixes and new options for running evaluations.

What's Changed

Bump project version to 0.3.3 by @caufieldjh in #218
Name params in call to complete by @caufieldjh in #225
Fixes for the BC5CDR evaluation by @caufieldjh in #226
Catch requests errors when call to NodeNormalizer endpoint fails by @caufieldjh in #234
Reduce redundancy in named entity list in evals by @caufieldjh in #236
Update documentation by @caufieldjh in #220
Repair clinical note generation and basic completion in CLI by @caufieldjh in #239
Parameter mis-usage fixes for CLI, OpenAI client, SPIRES engine, and gene set utils by @caufieldjh in #241
Add medical action extraction template by @caufieldjh in #208
Bugfixes for Wikipedia extract and search commands by @caufieldjh in #242
Add a template specifically for extracting human phenotypes by @caufieldjh in #214
Add parameter to disable chunking in SPIRES evals by @caufieldjh in #245
fix typo by @andrewsu in #247
Add model parameter to evaluation engine by @caufieldjh in #249
Fix #250 by @caufieldjh in #251
Add NER eval for BC5CDR by @caufieldjh in #252
Fix #253 by @caufieldjh in #254
Add gpt-4-1106-preview by @caufieldjh in #258
Add two more items to troubleshooting doc by @caufieldjh in #263
Add MAXO annotation evaluation by @caufieldjh in #259
Update dependencies for OpenAI API client and Pydantic compatibility and GPT4All by @caufieldjh in #271

Full Changelog: v0.3.3...v0.3.4