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Add CRAFT eval#273

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caufieldjh wants to merge 24 commits intomainmonarch-initiative/ontogpt:mainfrom craft_evalmonarch-initiative/ontogpt:craft_evalCopy head branch name to clipboard

+125,078-1

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Commits on Nov 22, 2023

• Init CRAFT eval

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• Add placeholder test data dir

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• Expand on eval

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• Add craft_concept template, first version

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• Change some entity names

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• Expand template

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• Change SequenceEntity to SequenceFeature

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• Expand template some more

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• A couple more annotators

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Commits on Nov 29, 2023

• Add description of annotation file prep

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• Add CRAFT annotations in BRAT standoff format

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• Add EvalCRAFTConcepts to eval resolver

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• Simple annotation loading

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• More document parsing

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Commits on Nov 30, 2023

• Add Cell class to schema

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• Don't consider SNOMED valid prefix for Taxon

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• Validate and sort entities in test docs

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Commits on Dec 1, 2023

• Check GO subtypes and deprecated status

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• Debug output

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• Parse molecular_function properly

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• Expanding eval

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Commits on Dec 12, 2023

• More documentation for eval

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• Filter each entity type in predicted_obj

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• Expanding

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