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caufieldjh authored Apr 14, 2024
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_OntoGPT_ is a Python package for extracting structured information from text with large language models (LLMs), _instruction prompts_, and ontology-based grounding.

Two different strategies for knowledge extraction are currently implemented in OntoGPT:

[For more details, please see the full documentation.](https://monarch-initiative.github.io/ontogpt/)

## Quick Start
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## Evaluations

OpenAI's functions have been evaluated on test data. Please see the full documentation for details on these evaluations and how to reproduce them.
OntoGPT's functions have been evaluated on test data. Please see the full documentation for details on these evaluations and how to reproduce them.
## Related Projects
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## Citation
The information extraction approach used in OntoGPT, SPIRES, is described further in: Caufield JH, Hegde H, Emonet V, Harris NL, Joachimiak MP, Matentzoglu N, et al. Structured prompt interrogation and recursive extraction of semantics (SPIRES): A method for populating knowledge bases using zero-shot learning. arXiv publication: <http://arxiv.org/abs/2304.02711>
The information extraction approach used in OntoGPT, SPIRES, is described further in: Caufield JH, Hegde H, Emonet V, Harris NL, Joachimiak MP, Matentzoglu N, et al. Structured prompt interrogation and recursive extraction of semantics (SPIRES): A method for populating knowledge bases using zero-shot learning. _Bioinformatics_, Volume 40, Issue 3, March 2024, btae104, [https://doi.org/10.1093/bioinformatics/btae104](https://doi.org/10.1093/bioinformatics/btae104).
## Acknowledgements
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