Removed temporary hack when generating documentation.

Adding cell type to docs
monarch-initiative · Jul 31, 2023 · 429032e · 429032e
1 parent 90d3eaa
commit 429032e
Show file tree

Hide file tree

Showing 4 changed files with 8 additions and 8 deletions.
diff --git a/Makefile b/Makefile
@@ -44,7 +44,7 @@ docs/index.md: README.md
 	cp $< $@
 
 docs/%/index.md: src/$(PACKAGE)/templates/%.yaml
-	$(TMPRUN) gen-doc --include-top-level-diagram --diagram-type er_diagram $< -d docs/$*
+	$(RUN) gen-doc --include-top-level-diagram --diagram-type er_diagram $< -d docs/$*
 
 
 serve:

diff --git a/mkdocs.yml b/mkdocs.yml
@@ -30,6 +30,7 @@ nav:
       - Core Upper Level Schema: core/index.md
       - Biochemical Reactions: reaction/index.md
       - Biological Processes: biological_process/index.md
+      - Cell Types: cell_type/index.md
       - Chemical to Disease: ctd/index.md
       - Diagnostic Procedures: diagnostic_procedure/index.md
       - Drugs and Mechanisms: drug/index.md

diff --git a/poetry.lock b/poetry.lock
diff --git a/pyproject.toml b/pyproject.toml
@@ -27,7 +27,7 @@ airium = ">=0.2.5"
 httpx = ">=0.23.3"
 aiohttp = ">=3.8.4"
 inflection = ">=0.5.1"
-linkml-runtime = ">=1.5.3"
+linkml-runtime = "^1.5.5"
 nlpcloud = ">=1.0.39"
 fastapi = {version = ">=0.88.0", optional = true}
 uvicorn = {version = ">=0.20.0", optional = true}