Merge pull request #740 from monarch-initiative/_BUILD_develop_23Dec2024

Data build - Week 4 step
monarch-initiative · Dec 31, 2024 · 3af343d · 3af343d
2 parents f7a4424 + fe7f9cd
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diff --git a/docs/metrics/doid.md b/docs/metrics/doid.md
@@ -2,16 +2,16 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/doid.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-12-06/doid.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-12-23/doid.owl
 
 ### Entities and axioms
 
 | Metric | Value |
 | ------ | ----- |
 | Annotation properties | 28 |
-| Axioms | 134099 |
-| Logical axioms | 16396 |
-| Classes | 13274 |
+| Axioms | 134288 |
+| Logical axioms | 16444 |
+| Classes | 13297 |
 | Object properties | 0 |
 | Data properties | 0 |
 | Individuals | 0 |
@@ -32,11 +32,11 @@
 
 | Metric | Value |
 | ------ | ----- |
-| AnnotationAssertion | 104400 |
+| AnnotationAssertion | 104518 |
 | SubAnnotationPropertyOf | 2 |
 | DisjointClasses | 26 |
-| Declaration | 13301 |
-| SubClassOf | 16370 |
+| Declaration | 13324 |
+| SubClassOf | 16418 |
 
 
 #### Entity namespaces: axiom counts by namespace
@@ -45,7 +45,7 @@
 | ------ | ----- |
 | oboInOwl | 12 |
 | owl | 2 |
-| DOID | 11710 |
+| DOID | 11733 |
 | HP | 116 |
 | xsd | 1 |
 | CL | 61 |
@@ -71,7 +71,7 @@
 
 | Metric | Value |
 | ------ | ----- |
-| Class | 46226 |
+| Class | 46345 |
 
 
 More information about the source can be found [in the documentation](../sources.md). The raw data (ontology metrics) can be found [on GitHub](https://github.com/monarch-initiative/mondo-ingest/tree/main/src/ontology/metadata).

diff --git a/docs/metrics/icd10cm.md b/docs/metrics/icd10cm.md
@@ -2,7 +2,7 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/icd10cm.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-12-06/icd10cm.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-12-23/icd10cm.owl
 
 ### Entities and axioms
 

diff --git a/docs/metrics/icd10who.md b/docs/metrics/icd10who.md
@@ -2,7 +2,7 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/icd10who.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-12-06/icd10who.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-12-23/icd10who.owl
 
 ### Entities and axioms
 

diff --git a/docs/metrics/icd11foundation.md b/docs/metrics/icd11foundation.md
@@ -2,7 +2,7 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/icd11foundation.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-12-06/icd11foundation.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-12-23/icd11foundation.owl
 
 ### Entities and axioms
 

diff --git a/docs/metrics/ncit.md b/docs/metrics/ncit.md
@@ -2,7 +2,7 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/ncit.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-12-06/ncit.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-12-23/ncit.owl
 
 ### Entities and axioms
 

diff --git a/docs/metrics/omim.md b/docs/metrics/omim.md
@@ -2,16 +2,16 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/omim.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-12-06/omim.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-12-23/omim.owl
 
 ### Entities and axioms
 
 | Metric | Value |
 | ------ | ----- |
-| Annotation properties | 21 |
-| Axioms | 358865 |
-| Logical axioms | 28223 |
-| Classes | 23601 |
+| Annotation properties | 23 |
+| Axioms | 373337 |
+| Logical axioms | 28245 |
+| Classes | 23610 |
 | Object properties | 7 |
 | Data properties | 0 |
 | Individuals | 0 |
@@ -32,23 +32,23 @@
 
 | Metric | Value |
 | ------ | ----- |
-| AnnotationAssertion | 307015 |
+| AnnotationAssertion | 321454 |
 | SubAnnotationPropertyOf | 2 |
-| Declaration | 23625 |
-| SubClassOf | 28223 |
+| Declaration | 23636 |
+| SubClassOf | 28245 |
 
 
 #### Entity namespaces: axiom counts by namespace
 
 | Metric | Value |
 | ------ | ----- |
-| prefix_unknown | 22163 |
-| oboInOwl | 4 |
+| prefix_unknown | 22171 |
+| oboInOwl | 6 |
 | owl | 2 |
 | xsd | 1 |
 | skos | 1 |
 | rdfs | 2 |
-| CHR | 1441 |
+| CHR | 1442 |
 | OMO | 1 |
 | MONDO | 1 |
 | rdf | 1 |
@@ -62,8 +62,8 @@
 
 | Metric | Value |
 | ------ | ----- |
-| Class | 80042 |
-| ObjectSomeValuesFrom | 23257 |
+| Class | 80095 |
+| ObjectSomeValuesFrom | 23263 |
 
 
 More information about the source can be found [in the documentation](../sources.md). The raw data (ontology metrics) can be found [on GitHub](https://github.com/monarch-initiative/mondo-ingest/tree/main/src/ontology/metadata).

diff --git a/docs/metrics/ordo.md b/docs/metrics/ordo.md
@@ -2,7 +2,7 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/ordo.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-12-06/ordo.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-12-23/ordo.owl
 
 ### Entities and axioms
 

diff --git a/docs/reports/mapped_deprecated.md b/docs/reports/mapped_deprecated.md
@@ -2,7 +2,7 @@
 | Ontology                                                  |   Tot deprecated in Mondo |
 |:----------------------------------------------------------|--------------------------:|
 | [NCIT](./mapped_deprecated_ncit.md)                       |                         5 |
-| [OMIM](./mapped_deprecated_omim.md)                       |                        47 |
+| [OMIM](./mapped_deprecated_omim.md)                       |                        48 |
 | [DOID](./mapped_deprecated_doid.md)                       |                         2 |
 | [ORDO](./mapped_deprecated_ordo.md)                       |                       190 |
 | [ICD11FOUNDATION](./mapped_deprecated_icd11foundation.md) |                         0 |

diff --git a/docs/reports/mapped_deprecated_omim.md b/docs/reports/mapped_deprecated_omim.md
@@ -17,6 +17,7 @@
 | MONDO:0008126 | OMIM:164891          | MONDO:equivalentObsolete |
 | MONDO:0008204 | OMIM:168850          | MONDO:equivalentObsolete |
 | MONDO:0008415 | OMIM:181515          | MONDO:equivalentObsolete |
+| MONDO:0008868 | OMIM:210550          | MONDO:equivalentObsolete |
 | MONDO:0009455 | OMIM:242870          | MONDO:equivalentObsolete |
 | MONDO:0009535 | OMIM:247440          | MONDO:equivalentObsolete |
 | MONDO:0009654 | OMIM:252700          | MONDO:equivalentObsolete |

diff --git a/docs/reports/migrate.md b/docs/reports/migrate.md
@@ -1,9 +1,9 @@
 # Migratable terms
 | Ontology                                        | Tot   |
 |:------------------------------------------------|:------|
-| [DOID](./migrate_doid.md)                       | 73    |
+| [DOID](./migrate_doid.md)                       | 94    |
 | [ORDO](./migrate_ordo.md)                       | 62    |
-| [OMIM](./migrate_omim.md)                       | 40    |
+| [OMIM](./migrate_omim.md)                       | 45    |
 | [ICD11FOUNDATION](./migrate_icd11foundation.md) | 4,593 |
 | [NCIT](./migrate_ncit.md)                       | 2,211 |
 | [ICD10WHO](./migrate_icd10who.md)               | 119   |