revert overview, delete commented code

monarch-initiative · Nov 14, 2023 · 68ad4f3 · 68ad4f3
1 parent c0ccf33
commit 68ad4f3
Show file tree

Hide file tree

Showing 3 changed files with 21 additions and 37 deletions.
diff --git a/frontend/src/pages/about/PageAbout.vue b/frontend/src/pages/about/PageAbout.vue
@@ -27,12 +27,6 @@
   <!-- main links to sub pages -->
   <AppSection>
     <AppFlex gap="big">
-      <!-- <AppTile
-        to="/overview"
-        icon="cogs"
-        title="Overview"
-        subtitle="How all the pieces of Monarch fit together"
-      /> -->
       <AppTile
         to="https://monarch-app.monarchinitiative.org/"
         icon="code"

diff --git a/frontend/src/pages/about/PageOverview.vue b/frontend/src/pages/about/PageOverview.vue
@@ -13,33 +13,23 @@
       how it all fits together.
     </p>
 
+    <img
+      src="@/assets/architecture.png"
+      alt="Diagram of Monarch infrastructure, described below."
+    />
+
     <p>
-      The three primary data types in the Monarch KG are genes, diseases, and
-      phenotypes. The image below details their entity (node) and link (edge)
-      counts and the unifying ontologies by which the source data and ontologies
-      are harmonized. Cross-species inference is accomplished via gene
-      orthology, homology, and phenotype similarity. Content dissemination is
-      via API, the Monarch UI, and within the clinical application Exomiser.
-      Note that the figure expresses only a portion of the integrated ontologies
-      in column C. For a comprehensive list see PHENIO documentation (linked
-      below).
+      Structured and unstructured data sources are loaded into SciGraph via
+      dipper (1), our data ingest pipeline. A variety of ontologies are
+      processed in the Monarch Integration Layer and are also loaded into
+      SciGraph, resulting in a combined knowledge and data graph (2). Data is
+      disseminated via SciGraph Services, wrapped around by the BioLink API (3).
+      This lightweight API makes few assumptions, acting as a data access layer
+      for all of Monarch’s Services. Users can interrogate Monarch using our
+      tools for text annotation, navigating the ontologies, and matching
+      phenotype profiles (4).
     </p>
 
-    <figure>
-      <img
-        src="@/assets/architecture.png"
-        alt="Diagram of Monarch infrastructure, described below."
-      />
-      <figcaption>
-        <strong> Data harmonization within the Monarch KG. </strong>
-        (A) Data types and counts. (B, C, D) Data sources, ontologies, and
-        knowledge graphs. (E) Cross-species inference. (F) Content dissemination
-        <br />
-        (Column D acronyms) GO: Gene Ontology; BP: Biological Process; MF:
-        Molecular Function; CC: Cellular Component
-      </figcaption>
-    </figure>
-
     <hr />
 
     <p>
@@ -54,8 +44,13 @@
         icon="github"
       />
       <AppButton
-        to="https://github.com/monarch-initiative/phenio/"
-        text="Phenio on GitHub"
+        to="https://github.com/SciGraph"
+        text="SciGraph on GitHub"
+        icon="github"
+      />
+      <AppButton
+        to="https://github.com/biolink"
+        text="BioLink on GitHub"
         icon="github"
       />
     </AppFlex>

diff --git a/frontend/src/router/index.ts b/frontend/src/router/index.ts
@@ -69,11 +69,6 @@ export const routes: RouteRecordRaw[] = [
   },
 
   /** about pages */
-  // {
-  //   path: "/overview",
-  //   name: "Overview",
-  //   component: () => import("../pages/about/PageOverview.vue"),
-  // },
   {
     path: "/cite",
     name: "Cite",