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Add workflow to upload coverage for main (#598)
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### Related issues

- Closes #554 

### Summary

- uploads coverage report for main branch for codecov to do comparisons
in Pull Requests.

### Checks

- [ ] All tests have passed (or issues created for failing tests)
amc-corey-cox authored Feb 14, 2024
1 parent bd2593e commit 23fd6b5
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62 changes: 62 additions & 0 deletions .github/workflows/codecov_main.yaml
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name: Upload coverage report for main branch
on:
push:
branches:
- main

jobs:
test-backend:
runs-on: ${{ matrix.os }}
strategy:
matrix:
python-version: ["3.9", "3.10", "3.11"]
os: [ubuntu-latest]
#os: [ ubuntu-latest, windows-latest ]

steps:
- uses: actions/checkout@v4
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}

#----------------------------------------------
# install & configure poetry
#----------------------------------------------
- name: Install Poetry
uses: snok/install-poetry@v1

#----------------------------------------------
# install your root project, if required
#----------------------------------------------
- name: Install library
run: poetry -C backend install --no-interaction

#----------------------------------------------
# run pytest
#----------------------------------------------
- name: Run tests
run: poetry -C backend run pytest backend/tests

#----------------------------------------------
# coverage report
#----------------------------------------------
- name: Generate coverage results
run: |
poetry -C backend run coverage run -m pytest backend/tests
poetry -C backend run coverage xml
poetry -C backend run coverage report -m
shell: bash

#----------------------------------------------
# upload coverage results
#----------------------------------------------
- name: Upload coverage report
if: github.repository == 'monarch-initiative/monarch-app'
uses: codecov/codecov-action@v3.1.0
with:
name: codecov-results-${{ matrix.python-version }}
token: ${{ secrets.CODECOV_TOKEN }}
file: coverage.xml
fail_ci_if_error: true

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