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Welcome to the IDGKG-gen wiki!

This page describes the individual publications used to generate the synthetic lethality dataset.

Work in progress

• Wang et al 2017

Finished

• Luo et al 2008

bommi2008 = idg2sl.parse_bommi_reddi_2008('data/bommi-reddy-2008.tsv', symbol2ncbi) turner_list = idg2sl.parse_turner_2008('data/turner-PARP1-2008.tsv', symbol2ncbi)

steckel2012 = idg2sl.parse_steckel_2012('data/steckel-2012-KRAS.tsv', symbol2ncbi) lord2008 = idg2sl.parse_lord_2008('data/lord-PARP1-2008.tsv', symbol2ncbi) toyoshima2008 = idg2sl.parse_toyoshima_2008('data/toyoshima-MYC-2008.tsv', symbol2ncbi)

shen2015 = idg2sl.parse_Shen2015('data/Shen_2015.tsv', symbol2ncbi) pathak2015 = idg2sl.parse_pathak_2015(symbol2ncbi) # 2 SL Interactions, hardcoded