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@molpopgen molpopgen released this 08 Jul 17:46
· 20 commits to main since this release
v0.23.0
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0.23.0

Bug fixes:

  • For multiplicative fitness models, "super lethal" mutations ("s" < -1.0)
    could results in positive fitness values.
    This is now fixed, and the fitness function returns as soon as "w" <= 0.
    PR {pr}1319

Deprecations

  • All previous deprecations have been removed. PR {pr}1301
  • Site frequency spectrum calculations from tables are now deprecated.
    PR {pr}1292
  • Redundant methods for loading demes graphs are now deprecated.
    PR {pr}1304

UI improvements

  • Add {attr}fwdpy11.ForwardDemesGraph.demes_graph.
    PR {pr}1297.
    PR {pr}1298.
  • Improve early detection of invalid optimum values.
    See issue {issue}1217 for context.
    PR {pr}1299.

C++ back end:

  • Code for genetic value calculations extracted into a location available
    for C++ unit testing.
    PR {pr}1319
  • Run c++ test suite through valgrind in CI. PR {pr}1296

Dependencies

  • pybind11 bumped to 2.12.0. PR {pr}1313
  • demes-forward-capi bumped to 0.5.0. PR {pr}1294
  • scipy dropped as a dependency. PR {pr}1292
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