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feat(RDF): semantic ontologies #4623

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svandenhoek
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What are the main changes you did

How to test

  • all tests succeed

Checklist

  • updated docs in case of new feature
  • added/updated tests
  • added/updated testplan to include a test for this fix, including ref to bug using # notation

@svandenhoek
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Blocking on #4566 (might cause merge conflicts)

 Conflicts:
	backend/molgenis-emx2-rdf/src/main/java/org/molgenis/emx2/rdf/ColumnTypeRdfMapper.java
	backend/molgenis-emx2-rdf/src/test/java/org/molgenis/emx2/rdf/ColumnTypeRdfMapperTest.java
@svandenhoek svandenhoek marked this pull request as ready for review February 10, 2025 10:26
.getRefTable()
.getTable()
.query()
.select(s("name"), s("ontologyTermURI"))
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oei, dat is erg duur om dat per stuk te doen. Komt dit vaak voor? Want dan zou je liever de originele query expanden?

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Wisselt, maar denk dat als het duur is dat het wel "te vaak" zal zijn.

Zal idd wel even kijken of ik ofwel de query kan uitbreiden met een subquery of ee andere oplossing kan vinden dan.

@svandenhoek svandenhoek marked this pull request as draft February 11, 2025 09:09
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RDF API: For semantics-output, ontologies should use ontologyTermURI instead
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